AT3G13960


Description : growth-regulating factor 5


Gene families : OG_01_0000900 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000900_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G13960
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AT2G06200 No alias growth-regulating factor 6 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G36400 No alias growth-regulating factor 3 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G52910 No alias growth-regulating factor 4 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g16900.1 No alias component GRF of GRF-GIF transcriptional complex 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_3720V3.1 No alias growth-regulating factor 2 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0009737 response to abscisic acid RCA Interproscan
BP GO:0009793 embryo development ending in seed dormancy RCA Interproscan
BP GO:0009845 seed germination RCA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0009965 leaf morphogenesis RCA Interproscan
BP GO:0010162 seed dormancy process RCA Interproscan
BP GO:0016570 histone modification RCA Interproscan
BP GO:0048366 leaf development IMP Interproscan
BP GO:0048366 leaf development TAS Interproscan
BP GO:0048449 floral organ formation RCA Interproscan
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0001708 cell fate specification IEP HCCA
BP GO:0001763 morphogenesis of a branching structure IEP HCCA
BP GO:0002237 response to molecule of bacterial origin IEP HCCA
BP GO:0003002 regionalization IEP HCCA
BP GO:0003156 regulation of animal organ formation IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003756 protein disulfide isomerase activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004860 protein kinase inhibitor activity IEP HCCA
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0006355 regulation of transcription, DNA-templated IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007166 cell surface receptor signaling pathway IEP HCCA
BP GO:0007167 enzyme linked receptor protein signaling pathway IEP HCCA
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008195 phosphatidate phosphatase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009641 shade avoidance IEP HCCA
BP GO:0009798 axis specification IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
BP GO:0009943 adaxial/abaxial axis specification IEP HCCA
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP HCCA
BP GO:0009947 centrolateral axis specification IEP HCCA
BP GO:0009955 adaxial/abaxial pattern specification IEP HCCA
BP GO:0009962 regulation of flavonoid biosynthetic process IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010051 xylem and phloem pattern formation IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010075 regulation of meristem growth IEP HCCA
BP GO:0010093 specification of floral organ identity IEP HCCA
BP GO:0010103 stomatal complex morphogenesis IEP HCCA
BP GO:0010148 transpiration IEP HCCA
BP GO:0010158 abaxial cell fate specification IEP HCCA
BP GO:0010159 specification of animal organ position IEP HCCA
BP GO:0010160 formation of animal organ boundary IEP HCCA
BP GO:0010199 organ boundary specification between lateral organs and the meristem IEP HCCA
BP GO:0010223 secondary shoot formation IEP HCCA
BP GO:0010229 inflorescence development IEP HCCA
BP GO:0010338 leaf formation IEP HCCA
BP GO:0010346 shoot axis formation IEP HCCA
BP GO:0010440 stomatal lineage progression IEP HCCA
BP GO:0010450 inflorescence meristem growth IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010492 maintenance of shoot apical meristem identity IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010865 stipule development IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
BP GO:0016246 RNA interference IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0019199 transmembrane receptor protein kinase activity IEP HCCA
MF GO:0019210 kinase inhibitor activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0022603 regulation of anatomical structure morphogenesis IEP HCCA
BP GO:0030155 regulation of cell adhesion IEP HCCA
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP HCCA
MF GO:0030332 cyclin binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031048 heterochromatin assembly by small RNA IEP HCCA
BP GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEP HCCA
CC GO:0031224 intrinsic component of membrane IEP HCCA
CC GO:0031225 anchored component of membrane IEP HCCA
CC GO:0031226 intrinsic component of plasma membrane IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031507 heterochromatin assembly IEP HCCA
BP GO:0031537 regulation of anthocyanin metabolic process IEP HCCA
BP GO:0031540 regulation of anthocyanin biosynthetic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0035194 post-transcriptional gene silencing by RNA IEP HCCA
BP GO:0035265 organ growth IEP HCCA
BP GO:0035266 meristem growth IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0040009 regulation of growth rate IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045165 cell fate commitment IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0046620 regulation of organ growth IEP HCCA
BP GO:0046622 positive regulation of organ growth IEP HCCA
MF GO:0047434 indolepyruvate decarboxylase activity IEP HCCA
BP GO:0048281 inflorescence morphogenesis IEP HCCA
BP GO:0048437 floral organ development IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048443 stamen development IEP HCCA
BP GO:0048444 floral organ morphogenesis IEP HCCA
BP GO:0048446 petal morphogenesis IEP HCCA
BP GO:0048448 stamen morphogenesis IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0048455 stamen formation IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0048504 regulation of timing of animal organ formation IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0048608 reproductive structure development IEP HCCA
BP GO:0048638 regulation of developmental growth IEP HCCA
BP GO:0048639 positive regulation of developmental growth IEP HCCA
BP GO:0048653 anther development IEP HCCA
BP GO:0048859 formation of anatomical boundary IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0065001 specification of axis polarity IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
BP GO:0090626 plant epidermis morphogenesis IEP HCCA
BP GO:0090691 formation of plant organ boundary IEP HCCA
BP GO:0090697 post-embryonic plant organ morphogenesis IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
BP GO:0090701 specification of plant organ identity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000024 regulation of leaf development IEP HCCA
BP GO:2000027 regulation of animal organ morphogenesis IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR014977 WRC_dom 82 122
IPR014978 Gln-Leu-Gln_QLQ 16 50
PLAZA 3.0 Dicots AT3G13960