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AT3G15200


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000166 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G15200
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT1G77360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G43820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g09820.1 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000224 peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003837 beta-ureidopropionase activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004749 ribose phosphate diphosphokinase activity IEP HCCA
MF GO:0004871 obsolete signal transducer activity IEP HCCA
BP GO:0006206 pyrimidine nucleobase metabolic process IEP HCCA
BP GO:0006208 pyrimidine nucleobase catabolic process IEP HCCA
BP GO:0006212 uracil catabolic process IEP HCCA
BP GO:0006491 N-glycan processing IEP HCCA
BP GO:0006517 protein deglycosylation IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009100 glycoprotein metabolic process IEP HCCA
BP GO:0009636 response to toxic substance IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010188 response to microbial phytotoxin IEP HCCA
MF GO:0015562 efflux transmembrane transporter activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0016882 cyclo-ligase activity IEP HCCA
BP GO:0019860 uracil metabolic process IEP HCCA
MF GO:0030272 5-formyltetrahydrofolate cyclo-ligase activity IEP HCCA
BP GO:0030433 ubiquitin-dependent ERAD pathway IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IEP HCCA
BP GO:0036503 ERAD pathway IEP HCCA
BP GO:0043393 regulation of protein binding IEP HCCA
BP GO:0043496 regulation of protein homodimerization activity IEP HCCA
BP GO:0046113 nucleobase catabolic process IEP HCCA
BP GO:0046653 tetrahydrofolate metabolic process IEP HCCA
MF GO:0047617 acyl-CoA hydrolase activity IEP HCCA
BP GO:0050829 defense response to Gram-negative bacterium IEP HCCA
BP GO:0051098 regulation of binding IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
CC GO:0071944 cell periphery IEP HCCA
BP GO:0072529 pyrimidine-containing compound catabolic process IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 246 294
IPR002885 Pentatricopeptide_repeat 350 397
IPR002885 Pentatricopeptide_repeat 320 347
IPR002885 Pentatricopeptide_repeat 458 486
IPR002885 Pentatricopeptide_repeat 180 207
IPR002885 Pentatricopeptide_repeat 146 172
IPR002885 Pentatricopeptide_repeat 424 452
PLAZA 3.0 Dicots AT3G15200