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  5. AT3G17530

AT3G17530


Description : F-box and associated interaction domains-containing protein


Gene families : OG_01_0000007 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G17530
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT1G11620 No alias F-box and associated interaction domains-containing protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G11810 No alias F-box associated ubiquitination effector family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G27490 No alias F-box and associated interaction domains-containing protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G32140 No alias F-box family protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G62270 No alias F-box and associated interaction domains-containing protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G65990 No alias type 2 peroxiredoxin-related / thiol specific... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G67450 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G24510 No alias F-box associated ubiquitination effector family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G33655 No alias F-box and associated interaction domains-containing protein 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G39355 No alias No description available 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G03405 No alias F-box associated ubiquitination effector family protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G04250 No alias F-box associated ubiquitination effector family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G13830 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G16020 No alias F-box associated ubiquitination effector protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G17280 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G17480 No alias F-box and associated interaction domains-containing protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G17500 No alias F-box family protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G17540 No alias F-box and associated interaction domains-containing protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G17560 No alias F-box and associated interaction domains-containing protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G17570 No alias F-box and associated interaction domains-containing protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G18330 No alias F-box family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G19410 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G19560 No alias F-box family protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G19890 No alias F-box family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G20030 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G21165 No alias No description available 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G22350 No alias F-box and associated interaction domains-containing protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G23680 No alias F-box associated ubiquitination effector family protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G24580 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G49520 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G09870 No alias F-box and associated interaction domains-containing protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G10190 No alias F-box and associated interaction domains-containing protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G17200 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G33290 No alias F-box and associated interaction domains-containing protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G36200 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G36730 No alias F-box and associated interaction domains-containing protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G36820 No alias F-box and associated interaction domains-containing protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G41490 No alias F-box associated ubiquitination effector family protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G41500 No alias F-box and associated interaction domains-containing protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G41510 No alias F-box and associated interaction domains-containing protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G47300 No alias F-box and associated interaction domains-containing protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006360 transcription by RNA polymerase I IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0009830 cell wall modification involved in abscission IEP HCCA
BP GO:0010222 stem vascular tissue pattern formation IEP HCCA
BP GO:0010588 cotyledon vascular tissue pattern formation IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0044277 cell wall disassembly IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 3 40
IPR006527 F-box-assoc_dom_typ1 204 368
PLAZA 3.0 Dicots AT3G17530