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  5. AT3G18790

AT3G18790


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has 1147 Blast hits to 965 proteins in 236 species: Archae - 12; Bacteria - 13; Metazoa - 351; Fungi - 230; Plants - 49; Viruses - 9; Other Eukaryotes - 483 (source: NCBI BLink).


Gene families : OG_01_0006437 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006437_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G18790
Cluster HCCA: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
Cre10.g427150 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g12890.1 No alias component ISY1/MAC8 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0002376 immune system process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004022 alcohol dehydrogenase (NAD+) activity IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005673 transcription factor TFIIE complex IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
CC GO:0005845 mRNA cap binding complex IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006482 protein demethylation IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006560 proline metabolic process IEP HCCA
BP GO:0006561 proline biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006986 response to unfolded protein IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008214 protein dealkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0008652 cellular amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
CC GO:0009504 cell plate IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009688 abscisic acid biosynthetic process IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009910 negative regulation of flower development IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010115 regulation of abscisic acid biosynthetic process IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010216 maintenance of DNA methylation IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
MF GO:0010301 xanthoxin dehydrogenase activity IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016572 histone phosphorylation IEP HCCA
BP GO:0016577 histone demethylation IEP HCCA
MF GO:0018455 alcohol dehydrogenase [NAD(P)+] activity IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019747 regulation of isoprenoid metabolic process IEP HCCA
BP GO:0023052 signaling IEP HCCA
CC GO:0030054 cell junction IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031048 heterochromatin assembly by small RNA IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
BP GO:0031053 primary miRNA processing IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031507 heterochromatin assembly IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032451 demethylase activity IEP HCCA
MF GO:0032452 histone demethylase activity IEP HCCA
MF GO:0032453 histone H3-methyl-lysine-4 demethylase activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
CC GO:0034518 RNA cap binding complex IEP HCCA
BP GO:0034605 cellular response to heat IEP HCCA
BP GO:0034620 cellular response to unfolded protein IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034720 histone H3-K4 demethylation IEP HCCA
CC GO:0035101 FACT complex IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
BP GO:0035966 response to topologically incorrect protein IEP HCCA
BP GO:0035967 cellular response to topologically incorrect protein IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043289 apocarotenoid biosynthetic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043455 regulation of secondary metabolic process IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0045893 positive regulation of transcription, DNA-templated IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046890 regulation of lipid biosynthetic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048581 negative regulation of post-embryonic development IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051093 negative regulation of developmental process IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051241 negative regulation of multicellular organismal process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070076 histone lysine demethylation IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070417 cellular response to cold IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0070988 demethylation IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0080178 5-carbamoylmethyl uridine residue modification IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140457 protein demethylase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1902645 tertiary alcohol biosynthetic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1902930 regulation of alcohol biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000242 negative regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR009360 Isy1 1 279
PLAZA 3.0 Dicots AT3G18790