AT3G19040

Description : histone acetyltransferase of the TAFII250 family 2

Gene families : OG_01_0001575 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001575_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G19040
Cluster	HCCA: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method	Actions
Pp3c10_350V3.1	No alias	HAC13 protein (HAC13)	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003712	transcription coregulator activity	TAS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004402	histone acetyltransferase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005669	transcription factor TFIID complex	TAS	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	None	Extended
BP	GO:0006366	transcription by RNA polymerase II	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006473	protein acetylation	None	Extended
BP	GO:0006475	internal protein amino acid acetylation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008080	N-acetyltransferase activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	IEP	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016407	acetyltransferase activity	None	Extended
MF	GO:0016410	N-acyltransferase activity	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016573	histone acetylation	IMP	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016746	acyltransferase activity	None	Extended
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0018393	internal peptidyl-lysine acetylation	None	Extended
BP	GO:0018394	peptidyl-lysine acetylation	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034212	peptide N-acetyltransferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043543	protein acylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000217	DNA secondary structure binding	IEP	HCCA
CC	GO:0000228	nuclear chromosome	IEP	HCCA
MF	GO:0000404	heteroduplex DNA loop binding	IEP	HCCA
BP	GO:0000710	meiotic mismatch repair	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003909	DNA ligase activity	IEP	HCCA
MF	GO:0003910	DNA ligase (ATP) activity	IEP	HCCA
MF	GO:0003983	UTP:glucose-1-phosphate uridylyltransferase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004835	tubulin-tyrosine ligase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006011	UDP-glucose metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006266	DNA ligation	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006323	DNA packaging	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	HCCA
BP	GO:0007131	reciprocal meiotic recombination	IEP	HCCA
CC	GO:0008278	cohesin complex	IEP	HCCA
BP	GO:0008608	attachment of spindle microtubules to kinetochore	IEP	HCCA
BP	GO:0010032	meiotic chromosome condensation	IEP	HCCA
MF	GO:0010491	UTP:arabinose-1-phosphate uridylyltransferase activity	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
MF	GO:0017103	UTP:galactose-1-phosphate uridylyltransferase activity	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0030261	chromosome condensation	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0031507	heterochromatin assembly	IEP	HCCA
MF	GO:0032135	DNA insertion or deletion binding	IEP	HCCA
CC	GO:0032300	mismatch repair complex	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033356	UDP-L-arabinose metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0035825	homologous recombination	IEP	HCCA
BP	GO:0040029	regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0043570	maintenance of DNA repeat elements	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0045003	double-strand break repair via synthesis-dependent strand annealing	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
BP	GO:0045596	negative regulation of cell differentiation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0046398	UDP-glucuronate metabolic process	IEP	HCCA
MF	GO:0047338	UTP:xylose-1-phosphate uridylyltransferase activity	IEP	HCCA
MF	GO:0047350	glucuronate-1-phosphate uridylyltransferase activity	IEP	HCCA
BP	GO:0048497	maintenance of floral organ identity	IEP	HCCA
BP	GO:0051177	meiotic sister chromatid cohesion	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051316	attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation	IEP	HCCA
BP	GO:0051455	monopolar spindle attachment to meiosis I kinetochore	IEP	HCCA
MF	GO:0051748	UTP-monosaccharide-1-phosphate uridylyltransferase activity	IEP	HCCA
BP	GO:0051754	meiotic sister chromatid cohesion, centromeric	IEP	HCCA
BP	GO:0052573	UDP-D-galactose metabolic process	IEP	HCCA
BP	GO:0060341	regulation of cellular localization	IEP	HCCA
BP	GO:0061982	meiosis I cell cycle process	IEP	HCCA
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	HCCA
MF	GO:0070569	uridylyltransferase activity	IEP	HCCA
BP	GO:0070601	centromeric sister chromatid cohesion	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0080154	regulation of fertilization	IEP	HCCA
BP	GO:0080155	regulation of double fertilization forming a zygote and endosperm	IEP	HCCA
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	HCCA
BP	GO:0090700	maintenance of plant organ identity	IEP	HCCA
BP	GO:0140458	pre-transcriptional gene silencing by RNA	IEP	HCCA
BP	GO:0140527	reciprocal homologous recombination	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA
CC	GO:1990391	DNA repair complex	IEP	HCCA
BP	GO:2000008	regulation of protein localization to cell surface	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022591	TFIID_sub1_DUF3591	491	1052
IPR001487	Bromodomain	1677	1744
IPR000626	Ubiquitin-like_dom	576	645

External Links

PLAZA 3.0 Dicots	AT3G19040

AT3G19040

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation