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  5. AT3G19630

AT3G19630


Description : Radical SAM superfamily protein


Gene families : OG_01_0005793 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005793_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G19630
Cluster HCCA: Cluster_79


Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle RCA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0006396 RNA processing RCA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000082 G1/S transition of mitotic cell cycle IEP HCCA
CC GO:0000139 Golgi membrane IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004722 protein serine/threonine phosphatase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
MF GO:0004845 uracil phosphoribosyltransferase activity IEP HCCA
MF GO:0004849 uridine kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005677 chromatin silencing complex IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006222 UMP biosynthetic process IEP HCCA
BP GO:0006349 regulation of gene expression by genetic imprinting IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006498 N-terminal protein lipidation IEP HCCA
BP GO:0006499 N-terminal protein myristoylation IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007021 tubulin complex assembly IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008356 asymmetric cell division IEP HCCA
BP GO:0008360 regulation of cell shape IEP HCCA
BP GO:0008655 pyrimidine-containing compound salvage IEP HCCA
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009129 pyrimidine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009174 pyrimidine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009960 endosperm development IEP HCCA
BP GO:0010019 chloroplast-nucleus signaling pathway IEP HCCA
BP GO:0010064 embryonic shoot morphogenesis IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0010091 trichome branching IEP HCCA
BP GO:0010138 pyrimidine ribonucleotide salvage IEP HCCA
BP GO:0010222 stem vascular tissue pattern formation IEP HCCA
MF GO:0010283 pinoresinol reductase activity IEP HCCA
BP GO:0010380 regulation of chlorophyll biosynthetic process IEP HCCA
BP GO:0010482 regulation of epidermal cell division IEP HCCA
BP GO:0010675 regulation of cellular carbohydrate metabolic process IEP HCCA
BP GO:0010769 regulation of cell morphogenesis involved in differentiation IEP HCCA
CC GO:0016021 integral component of membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016657 oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor IEP HCCA
MF GO:0016929 SUMO-specific protease activity IEP HCCA
BP GO:0018377 protein myristoylation IEP HCCA
MF GO:0019107 myristoyltransferase activity IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019206 nucleoside kinase activity IEP HCCA
BP GO:0019722 calcium-mediated signaling IEP HCCA
BP GO:0019932 second-messenger-mediated signaling IEP HCCA
BP GO:0022619 generative cell differentiation IEP HCCA
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP HCCA
BP GO:0030856 regulation of epithelial cell differentiation IEP HCCA
BP GO:0031128 developmental induction IEP HCCA
BP GO:0031129 inductive cell-cell signaling IEP HCCA
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
BP GO:0031425 chloroplast RNA processing IEP HCCA
BP GO:0032262 pyrimidine nucleotide salvage IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
BP GO:0032881 regulation of polysaccharide metabolic process IEP HCCA
BP GO:0042023 DNA endoreduplication IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042814 monopolar cell growth IEP HCCA
BP GO:0043094 cellular metabolic compound salvage IEP HCCA
BP GO:0043173 nucleotide salvage IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044206 UMP salvage IEP HCCA
BP GO:0044770 cell cycle phase transition IEP HCCA
BP GO:0044772 mitotic cell cycle phase transition IEP HCCA
BP GO:0044786 cell cycle DNA replication IEP HCCA
BP GO:0044843 cell cycle G1/S phase transition IEP HCCA
BP GO:0045604 regulation of epidermal cell differentiation IEP HCCA
BP GO:0045682 regulation of epidermis development IEP HCCA
BP GO:0046049 UMP metabolic process IEP HCCA
BP GO:0046443 FAD metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048530 fruit morphogenesis IEP HCCA
BP GO:0048598 embryonic morphogenesis IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0051783 regulation of nuclear division IEP HCCA
BP GO:0071514 genetic imprinting IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072387 flavin adenine dinucleotide metabolic process IEP HCCA
BP GO:0090056 regulation of chlorophyll metabolic process IEP HCCA
BP GO:0090329 regulation of DNA-dependent DNA replication IEP HCCA
BP GO:0090435 protein localization to nuclear envelope IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP HCCA
BP GO:1901402 negative regulation of tetrapyrrole metabolic process IEP HCCA
BP GO:1901463 regulation of tetrapyrrole biosynthetic process IEP HCCA
BP GO:1901464 negative regulation of tetrapyrrole biosynthetic process IEP HCCA
BP GO:1902325 negative regulation of chlorophyll biosynthetic process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
BP GO:2000024 regulation of leaf development IEP HCCA
BP GO:2000036 regulation of stem cell population maintenance IEP HCCA
BP GO:2000039 regulation of trichome morphogenesis IEP HCCA
BP GO:2000904 regulation of starch metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007197 rSAM 120 277
PLAZA 3.0 Dicots AT3G19630