AT3G22630

Description : 20S proteasome beta subunit D1

Gene families : OG_01_0002540 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002540_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G22630
Cluster	HCCA: Cluster_35

Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IDA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005839	proteasome core complex	TAS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	ISS	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0035966	response to topologically incorrect protein	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043248	proteasome assembly	RCA	Interproscan
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0051788	response to misfolded protein	RCA	Interproscan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080129	proteasome core complex assembly	RCA	Interproscan
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905368	peptidase complex	None	Extended
CC	GO:1905369	endopeptidase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	HCCA
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0003993	acid phosphatase activity	IEP	HCCA
MF	GO:0004112	cyclic-nucleotide phosphodiesterase activity	IEP	HCCA
MF	GO:0004424	imidazoleglycerol-phosphate dehydratase activity	IEP	HCCA
MF	GO:0004576	oligosaccharyl transferase activity	IEP	HCCA
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	HCCA
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	HCCA
MF	GO:0005402	carbohydrate:cation symporter activity	IEP	HCCA
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0005986	sucrose biosynthetic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006278	RNA-dependent DNA biosynthetic process	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin assembly	IEP	HCCA
BP	GO:0006349	regulation of gene expression by genetic imprinting	IEP	HCCA
BP	GO:0006547	histidine metabolic process	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006664	glycolipid metabolic process	IEP	HCCA
BP	GO:0006817	phosphate ion transport	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0007051	spindle organization	IEP	HCCA
BP	GO:0007131	reciprocal meiotic recombination	IEP	HCCA
BP	GO:0007154	cell communication	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0007264	small GTPase mediated signal transduction	IEP	HCCA
MF	GO:0008509	anion transmembrane transporter activity	IEP	HCCA
BP	GO:0009247	glycolipid biosynthetic process	IEP	HCCA
BP	GO:0009267	cellular response to starvation	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009943	adaxial/abaxial axis specification	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0009991	response to extracellular stimulus	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010212	response to ionizing radiation	IEP	HCCA
BP	GO:0010358	leaf shaping	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0015114	phosphate ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015293	symporter activity	IEP	HCCA
MF	GO:0015294	solute:cation symporter activity	IEP	HCCA
MF	GO:0015295	solute:proton symporter activity	IEP	HCCA
BP	GO:0016036	cellular response to phosphate starvation	IEP	HCCA
MF	GO:0016157	sucrose synthase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0019374	galactolipid metabolic process	IEP	HCCA
BP	GO:0019375	galactolipid biosynthetic process	IEP	HCCA
BP	GO:0019432	triglyceride biosynthetic process	IEP	HCCA
BP	GO:0022610	biological adhesion	IEP	HCCA
MF	GO:0022853	active ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0031047	gene silencing by RNA	IEP	HCCA
BP	GO:0031048	heterochromatin assembly by small RNA	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031507	heterochromatin assembly	IEP	HCCA
BP	GO:0031667	response to nutrient levels	IEP	HCCA
BP	GO:0031668	cellular response to extracellular stimulus	IEP	HCCA
BP	GO:0031669	cellular response to nutrient levels	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034220	ion transmembrane transport	IEP	HCCA
BP	GO:0035825	homologous recombination	IEP	HCCA
BP	GO:0040029	regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0042594	response to starvation	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044030	regulation of DNA methylation	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0045892	negative regulation of transcription, DNA-templated	IEP	HCCA
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
MF	GO:0047184	1-acylglycerophosphocholine O-acyltransferase activity	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051225	spindle assembly	IEP	HCCA
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051567	histone H3-K9 methylation	IEP	HCCA
MF	GO:0052731	phosphocholine phosphatase activity	IEP	HCCA
MF	GO:0052732	phosphoethanolamine phosphatase activity	IEP	HCCA
BP	GO:0061647	histone H3-K9 modification	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070588	calcium ion transmembrane transport	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0071496	cellular response to external stimulus	IEP	HCCA
BP	GO:0071514	genetic imprinting	IEP	HCCA
MF	GO:0071617	lysophospholipid acyltransferase activity	IEP	HCCA
BP	GO:0071897	DNA biosynthetic process	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
BP	GO:0140527	reciprocal homologous recombination	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
MF	GO:1901683	arsenate ion transmembrane transporter activity	IEP	HCCA
BP	GO:1901684	arsenate ion transmembrane transport	IEP	HCCA
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1903509	liposaccharide metabolic process	IEP	HCCA
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	3	182

External Links

PLAZA 3.0 Dicots	AT3G22630

AT3G22630

Expression Profile

Co-expression Networks

Functional Annotation