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  5. AT3G23955

AT3G23955


Description : F-box family protein


Gene families : OG_01_0000057 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G23955
Cluster HCCA: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
AT1G13780 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G16930 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G16940 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G32020 No alias F-box family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G60410 No alias F-box family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G66640 No alias RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G78730 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G78750 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G80470 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G22590 No alias Leucine Rich Repeat protein family 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G22670 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G22730 No alias F-box/RNI-like/FBD-like domains-containing protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G25850 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44940 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44950 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44970 No alias Protein with RNI-like/FBD-like domains 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44980 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G53635 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G53840 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
CC GO:0005851 eukaryotic translation initiation factor 2B complex IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006352 DNA-templated transcription, initiation IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
MF GO:0010314 phosphatidylinositol-5-phosphate binding IEP HCCA
BP GO:0016093 polyprenol metabolic process IEP HCCA
BP GO:0016094 polyprenol biosynthetic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0018024 histone-lysine N-methyltransferase activity IEP HCCA
BP GO:0019348 dolichol metabolic process IEP HCCA
BP GO:0019408 dolichol biosynthetic process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0051568 histone H3-K4 methylation IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 61 94
IPR006566 FBD 327 371
PLAZA 3.0 Dicots AT3G23955