AT3G26560

Description : ATP-dependent RNA helicase, putative

Gene families : OG_01_0005435 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005435_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G26560
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
Mp2g13680.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_9270V3.1	No alias	ATP-dependent RNA helicase, putative	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_27130V3.1	No alias	RNA helicase family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_09675.1	No alias	RNA helicase (Prp2)	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000226	microtubule cytoskeleton organization	RCA	Interproscan
BP	GO:0000910	cytokinesis	None	Extended
BP	GO:0000911	cytokinesis by cell plate formation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006486	protein glycosylation	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
CC	GO:0030054	cell junction	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043413	macromolecule glycosylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070085	glycosylation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002100	tRNA wobble adenosine to inosine editing	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0004000	adenosine deaminase activity	IEP	HCCA
MF	GO:0004084	branched-chain-amino-acid transaminase activity	IEP	HCCA
CC	GO:0005665	RNA polymerase II, core complex	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
BP	GO:0006382	adenosine to inosine editing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0007088	regulation of mitotic nuclear division	IEP	HCCA
BP	GO:0007093	mitotic cell cycle checkpoint signaling	IEP	HCCA
BP	GO:0007094	mitotic spindle assembly checkpoint signaling	IEP	HCCA
MF	GO:0008251	tRNA-specific adenosine deaminase activity	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
BP	GO:0010965	regulation of mitotic sister chromatid separation	IEP	HCCA
MF	GO:0015562	efflux transmembrane transporter activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	HCCA
MF	GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity	IEP	HCCA
BP	GO:0016553	base conversion or substitution editing	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016783	sulfurtransferase activity	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
BP	GO:0018023	peptidyl-lysine trimethylation	IEP	HCCA
MF	GO:0019239	deaminase activity	IEP	HCCA
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	HCCA
BP	GO:0030071	regulation of mitotic metaphase/anaphase transition	IEP	HCCA
CC	GO:0030118	clathrin coat	IEP	HCCA
CC	GO:0030125	clathrin vesicle coat	IEP	HCCA
MF	GO:0031071	cysteine desulfurase activity	IEP	HCCA
MF	GO:0031490	chromatin DNA binding	IEP	HCCA
BP	GO:0031577	spindle checkpoint signaling	IEP	HCCA
CC	GO:0031981	nuclear lumen	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0033045	regulation of sister chromatid segregation	IEP	HCCA
BP	GO:0033046	negative regulation of sister chromatid segregation	IEP	HCCA
BP	GO:0033047	regulation of mitotic sister chromatid segregation	IEP	HCCA
BP	GO:0033048	negative regulation of mitotic sister chromatid segregation	IEP	HCCA
CC	GO:0034708	methyltransferase complex	IEP	HCCA
CC	GO:0035097	histone methyltransferase complex	IEP	HCCA
BP	GO:0045839	negative regulation of mitotic nuclear division	IEP	HCCA
BP	GO:0045841	negative regulation of mitotic metaphase/anaphase transition	IEP	HCCA
BP	GO:0045930	negative regulation of mitotic cell cycle	IEP	HCCA
CC	GO:0048188	Set1C/COMPASS complex	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051568	histone H3-K4 methylation	IEP	HCCA
BP	GO:0051783	regulation of nuclear division	IEP	HCCA
BP	GO:0051784	negative regulation of nuclear division	IEP	HCCA
BP	GO:0051983	regulation of chromosome segregation	IEP	HCCA
BP	GO:0051985	negative regulation of chromosome segregation	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0060776	simple leaf morphogenesis	IEP	HCCA
BP	GO:0071173	spindle assembly checkpoint signaling	IEP	HCCA
BP	GO:0071174	mitotic spindle checkpoint signaling	IEP	HCCA
BP	GO:0080182	histone H3-K4 trimethylation	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	HCCA
BP	GO:1901991	negative regulation of mitotic cell cycle phase transition	IEP	HCCA
BP	GO:1902099	regulation of metaphase/anaphase transition of cell cycle	IEP	HCCA
BP	GO:1902100	negative regulation of metaphase/anaphase transition of cell cycle	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA
BP	GO:1905818	regulation of chromosome separation	IEP	HCCA
BP	GO:1905819	negative regulation of chromosome separation	IEP	HCCA
BP	GO:2000816	negative regulation of mitotic sister chromatid separation	IEP	HCCA
BP	GO:2001251	negative regulation of chromosome organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	521	671
IPR001650	Helicase_C	713	845
IPR007502	Helicase-assoc_dom	907	995
IPR003029	S1_domain	213	281
IPR011709	DUF1605	1053	1128

External Links

PLAZA 3.0 Dicots	AT3G26560

AT3G26560

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation