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  5. AT3G28620

AT3G28620


Description : Zinc finger, C3HC4 type (RING finger) family protein


Gene families : OG_01_0003038 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003038_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G28620
Cluster HCCA: Cluster_22


Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP HCCA
BP GO:0002229 defense response to oomycetes IEP HCCA
BP GO:0002239 response to oomycetes IEP HCCA
MF GO:0003691 double-stranded telomeric DNA binding IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0004930 G protein-coupled receptor activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005742 mitochondrial outer membrane translocase complex IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006089 lactate metabolic process IEP HCCA
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
MF GO:0008020 G protein-coupled photoreceptor activity IEP HCCA
BP GO:0009438 methylglyoxal metabolic process IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0009739 response to gibberellin IEP HCCA
MF GO:0009881 photoreceptor activity IEP HCCA
MF GO:0009883 red or far-red light photoreceptor activity IEP HCCA
BP GO:0015711 organic anion transport IEP HCCA
BP GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEP HCCA
BP GO:0034635 glutathione transport IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
MF GO:0042162 telomeric DNA binding IEP HCCA
BP GO:0042180 cellular ketone metabolic process IEP HCCA
BP GO:0042182 ketone catabolic process IEP HCCA
BP GO:0042939 tripeptide transport IEP HCCA
MF GO:0043047 single-stranded telomeric DNA binding IEP HCCA
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEP HCCA
BP GO:0046185 aldehyde catabolic process IEP HCCA
BP GO:0051596 methylglyoxal catabolic process IEP HCCA
BP GO:0061727 methylglyoxal catabolic process to lactate IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0072337 modified amino acid transport IEP HCCA
BP GO:0072348 sulfur compound transport IEP HCCA
CC GO:0098799 outer mitochondrial membrane protein complex IEP HCCA
MF GO:0098847 sequence-specific single stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 159 203
PLAZA 3.0 Dicots AT3G28620