AT3G28660

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0011689 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G28660
Cluster	HCCA: Cluster_309

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT3G28640	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.1	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
MF	GO:0004016	adenylate cyclase activity	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
MF	GO:0009975	cyclase activity	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0016441	posttranscriptional gene silencing	IEP	HCCA
MF	GO:0016849	phosphorus-oxygen lyase activity	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	181	229
IPR002885	Pentatricopeptide_repeat	80	107
IPR002885	Pentatricopeptide_repeat	286	314
IPR002885	Pentatricopeptide_repeat	258	285
IPR002885	Pentatricopeptide_repeat	352	383

External Links

PLAZA 3.0 Dicots	AT3G28660