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AT1G14470


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000019 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000019_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G14470
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AT3G22690 No alias CONTAINS InterPro DOMAIN/s: Protein of unknown function... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G25970 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G13230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G39680 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_930V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000374 Group III intron splicing IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005851 eukaryotic translation initiation factor 2B complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0007143 female meiotic nuclear division IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
MF GO:0010314 phosphatidylinositol-5-phosphate binding IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0018024 histone-lysine N-methyltransferase activity IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0048446 petal morphogenesis IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0051568 histone H3-K4 methylation IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
BP GO:0090351 seedling development IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 328 357
IPR002885 Pentatricopeptide_repeat 463 509
IPR002885 Pentatricopeptide_repeat 360 408
IPR002885 Pentatricopeptide_repeat 227 274
IPR002885 Pentatricopeptide_repeat 420 462
IPR002885 Pentatricopeptide_repeat 170 197
IPR002885 Pentatricopeptide_repeat 140 164
PLAZA 3.0 Dicots AT1G14470