AT3G28958

Description : Cupredoxin superfamily protein

Gene families : OG_01_0000215 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000215_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G28958
Cluster	HCCA: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method
AT1G43730	No alias	RNA-directed DNA polymerase (reverse...	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G45063	No alias	copper ion binding;electron carriers	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G60720	No alias	RNA-directed DNA polymerase (reverse...	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G04650	No alias	RNA-directed DNA polymerase (reverse...	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G05095	No alias	BEST Arabidopsis thaliana protein match is: RNA-directed...	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G11565	No alias	No description available	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	ISM	Interproscan
CC	GO:0016020	membrane	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000412	histone peptidyl-prolyl isomerization	IEP	HCCA
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0005527	macrolide binding	IEP	HCCA
MF	GO:0005528	FK506 binding	IEP	HCCA
CC	GO:0009543	chloroplast thylakoid lumen	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
CC	GO:0031977	thylakoid lumen	IEP	HCCA
CC	GO:0031978	plastid thylakoid lumen	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003245	Phytocyanin_dom	86	143

External Links

PLAZA 3.0 Dicots	AT3G28958