1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT3G42770

AT3G42770


Description : F-box/RNI-like/FBD-like domains-containing protein


Gene families : OG_01_0000021 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G42770
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
AT1G47915 No alias F-box family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G52650 No alias F-box/RNI-like superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G29930 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G49150 No alias F-box/RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58860 No alias F-box/RNI-like superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58940 No alias F-box/RNI-like superfamily protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58960 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59190 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59230 No alias RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59240 No alias RNI-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G62440 No alias F-box/RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G22280 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G15620 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G25860 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G35926 No alias Protein with RNI-like/FBD-like domains 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38396 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006863 purine nucleobase transport RCA Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001708 cell fate specification IEP HCCA
MF GO:0005345 purine nucleobase transmembrane transporter activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0009740 gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009913 epidermal cell differentiation IEP HCCA
BP GO:0010476 gibberellin mediated signaling pathway IEP HCCA
MF GO:0015205 nucleobase transmembrane transporter activity IEP HCCA
BP GO:0030855 epithelial cell differentiation IEP HCCA
BP GO:0032880 regulation of protein localization IEP HCCA
BP GO:0045168 cell-cell signaling involved in cell fate commitment IEP HCCA
BP GO:0048444 floral organ morphogenesis IEP HCCA
BP GO:0048445 carpel morphogenesis IEP HCCA
BP GO:0048629 trichome patterning IEP HCCA
BP GO:0090697 post-embryonic plant organ morphogenesis IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 2 35
IPR013101 Leu-rich_rpt_2 434 459
IPR013101 Leu-rich_rpt_2 160 184
PLAZA 3.0 Dicots AT3G42770