AT3G43180

Description : RING/U-box superfamily protein

Gene families : OG_01_0000252 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G43180
Cluster	HCCA: Cluster_156

Target	Alias	Description	ECC score	Gene Family Method
AT2G16520	No alias	FUNCTIONS IN: molecular_function unknown; INVOLVED IN:...	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G21420	No alias	IBR domain containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G22940	No alias	BEST Arabidopsis thaliana protein match is: zinc finger...	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45460	No alias	IBR domain containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45470	No alias	IBR domain containing protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45480	No alias	RING/U-box protein with C6HC-type zinc finger	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45540	No alias	RING/U-box protein with C6HC-type zinc finger	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45560	No alias	zinc finger (C3HC4-type RING finger) family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45570	No alias	RING/U-box protein with C6HC-type zinc finger domain	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G07640	No alias	RING/U-box superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G37560	No alias	RING/U-box superfamily protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
MF	GO:0008270	zinc ion binding	ISS	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0005576	extracellular region	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018957	Znf_C3HC4_RING-type	59	104

External Links

PLAZA 3.0 Dicots	AT3G43180