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AT3G43590


Description : zinc knuckle (CCHC-type) family protein


Gene families : OG_01_0002566 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002566_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G43590
Cluster HCCA: Cluster_252


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
BP GO:0000076 DNA replication checkpoint signaling IEP HCCA
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000932 P-body IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
BP GO:0001932 regulation of protein phosphorylation IEP HCCA
BP GO:0001933 negative regulation of protein phosphorylation IEP HCCA
BP GO:0003002 regionalization IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-dependent DNA replication IEP HCCA
BP GO:0006469 negative regulation of protein kinase activity IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
BP GO:0007032 endosome organization IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
CC GO:0009528 plastid inner membrane IEP HCCA
BP GO:0009687 abscisic acid metabolic process IEP HCCA
BP GO:0009688 abscisic acid biosynthetic process IEP HCCA
CC GO:0009706 chloroplast inner membrane IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009956 radial pattern formation IEP HCCA
BP GO:0010099 regulation of photomorphogenesis IEP HCCA
BP GO:0010305 leaf vascular tissue pattern formation IEP HCCA
BP GO:0010496 intercellular transport IEP HCCA
BP GO:0010563 negative regulation of phosphorus metabolic process IEP HCCA
BP GO:0010603 regulation of cytoplasmic mRNA processing body assembly IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016755 aminoacyltransferase activity IEP HCCA
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP HCCA
BP GO:0017148 negative regulation of translation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
MF GO:0030276 clathrin binding IEP HCCA
BP GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031400 negative regulation of protein modification process IEP HCCA
BP GO:0031570 DNA integrity checkpoint signaling IEP HCCA
BP GO:0032268 regulation of cellular protein metabolic process IEP HCCA
BP GO:0032269 negative regulation of cellular protein metabolic process IEP HCCA
BP GO:0033673 negative regulation of kinase activity IEP HCCA
BP GO:0033962 P-body assembly IEP HCCA
BP GO:0034249 negative regulation of cellular amide metabolic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
CC GO:0035770 ribonucleoprotein granule IEP HCCA
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP HCCA
BP GO:0042023 DNA endoreduplication IEP HCCA
BP GO:0042326 negative regulation of phosphorylation IEP HCCA
BP GO:0043288 apocarotenoid metabolic process IEP HCCA
BP GO:0043289 apocarotenoid biosynthetic process IEP HCCA
BP GO:0043549 regulation of kinase activity IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0044089 positive regulation of cellular component biogenesis IEP HCCA
BP GO:0044786 cell cycle DNA replication IEP HCCA
BP GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0045859 regulation of protein kinase activity IEP HCCA
BP GO:0045936 negative regulation of phosphate metabolic process IEP HCCA
BP GO:0046937 phytochelatin metabolic process IEP HCCA
BP GO:0046938 phytochelatin biosynthetic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051248 negative regulation of protein metabolic process IEP HCCA
BP GO:0051338 regulation of transferase activity IEP HCCA
BP GO:0051348 negative regulation of transferase activity IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0071901 negative regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0080171 lytic vacuole organization IEP HCCA
BP GO:0090057 root radial pattern formation IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
BP GO:1902115 regulation of organelle assembly IEP HCCA
BP GO:1902117 positive regulation of organelle assembly IEP HCCA
BP GO:1902644 tertiary alcohol metabolic process IEP HCCA
BP GO:1902645 tertiary alcohol biosynthetic process IEP HCCA
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP HCCA
BP GO:1904030 negative regulation of cyclin-dependent protein kinase activity IEP HCCA
BP GO:1990019 protein storage vacuole organization IEP HCCA
BP GO:2000030 regulation of response to red or far red light IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 210 224
IPR001878 Znf_CCHC 167 182
IPR001878 Znf_CCHC 358 373
IPR001878 Znf_CCHC 326 342
PLAZA 3.0 Dicots AT3G43590