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  5. AT1G02420

AT1G02420


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000166 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G02420
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AT1G52640 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G80550 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G22670 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G61360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G01570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0005838 proteasome regulatory particle IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0009956 radial pattern formation IEP HCCA
BP GO:0010017 red or far-red light signaling pathway IEP HCCA
BP GO:0010018 far-red light signaling pathway IEP HCCA
BP GO:0010496 intercellular transport IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
BP GO:0042753 positive regulation of circadian rhythm IEP HCCA
BP GO:0051568 histone H3-K4 methylation IEP HCCA
BP GO:0071490 cellular response to far red light IEP HCCA
BP GO:0090057 root radial pattern formation IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 244 291
IPR002885 Pentatricopeptide_repeat 314 360
IPR002885 Pentatricopeptide_repeat 392 417
IPR002885 Pentatricopeptide_repeat 224 242
IPR002885 Pentatricopeptide_repeat 426 451
PLAZA 3.0 Dicots AT1G02420