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AT3G45480


Description : RING/U-box protein with C6HC-type zinc finger


Gene families : OG_01_0000252 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G45480
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT2G16520 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G19610 No alias RING/U-box superfamily protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G21420 No alias IBR domain containing protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G22940 No alias BEST Arabidopsis thaliana protein match is: zinc finger... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G25360 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G25370 No alias RING/U-box superfamily protein 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G26135 No alias RING/U-box protein with C6HC-type zinc finger 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G43180 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45470 No alias IBR domain containing protein 0.17 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45500 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45510 No alias RING/U-box protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G07640 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0004871 obsolete signal transducer activity IEP HCCA
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP HCCA
MF GO:0005337 nucleoside transmembrane transporter activity IEP HCCA
MF GO:0005351 carbohydrate:proton symporter activity IEP HCCA
MF GO:0005402 carbohydrate:cation symporter activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005887 integral component of plasma membrane IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010584 pollen exine formation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
MF GO:0015114 phosphate ion transmembrane transporter activity IEP HCCA
MF GO:0015144 carbohydrate transmembrane transporter activity IEP HCCA
MF GO:0015145 monosaccharide transmembrane transporter activity IEP HCCA
MF GO:0015295 solute:proton symporter activity IEP HCCA
BP GO:0015749 monosaccharide transmembrane transport IEP HCCA
BP GO:0015858 nucleoside transport IEP HCCA
BP GO:0018126 protein hydroxylation IEP HCCA
BP GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEP HCCA
BP GO:0019511 peptidyl-proline hydroxylation IEP HCCA
CC GO:0031226 intrinsic component of plasma membrane IEP HCCA
BP GO:0034219 carbohydrate transmembrane transport IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048444 floral organ morphogenesis IEP HCCA
MF GO:0051119 sugar transmembrane transporter activity IEP HCCA
BP GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IEP HCCA
BP GO:0090697 post-embryonic plant organ morphogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002867 IBR_dom 225 291
IPR002156 RNaseH_domain 26 140
PLAZA 3.0 Dicots AT3G45480