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  5. AT3G45500

AT3G45500


Description : BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 48 Blast hits to 46 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG_01_0000252 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G45500
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AT2G16520 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G19610 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G21420 No alias IBR domain containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G25370 No alias RING/U-box superfamily protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G26135 No alias RING/U-box protein with C6HC-type zinc finger 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45460 No alias IBR domain containing protein 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45470 No alias IBR domain containing protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45480 No alias RING/U-box protein with C6HC-type zinc finger 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45510 No alias RING/U-box protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45540 No alias RING/U-box protein with C6HC-type zinc finger 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45560 No alias zinc finger (C3HC4-type RING finger) family protein 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45570 No alias RING/U-box protein with C6HC-type zinc finger domain 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP HCCA
MF GO:0004044 amidophosphoribosyltransferase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006144 purine nucleobase metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009113 purine nucleobase biosynthetic process IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
InterPro domains Description Start Stop
IPR002156 RNaseH_domain 21 76
PLAZA 3.0 Dicots AT3G45500