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  5. AT3G45570

AT3G45570


Description : RING/U-box protein with C6HC-type zinc finger domain


Gene families : OG_01_0000252 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G45570
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT2G16520 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G19610 No alias RING/U-box superfamily protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G21420 No alias IBR domain containing protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G22940 No alias BEST Arabidopsis thaliana protein match is: zinc finger... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G25360 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G25370 No alias RING/U-box superfamily protein 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G26135 No alias RING/U-box protein with C6HC-type zinc finger 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G43180 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45470 No alias IBR domain containing protein 0.18 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45500 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45510 No alias RING/U-box protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G07640 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G37560 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0009901 anther dehiscence IEP HCCA
MF GO:0015114 phosphate ion transmembrane transporter activity IEP HCCA
MF GO:0015144 carbohydrate transmembrane transporter activity IEP HCCA
CC GO:0031224 intrinsic component of membrane IEP HCCA
CC GO:0031225 anchored component of membrane IEP HCCA
InterPro domains Description Start Stop
IPR002867 IBR_dom 238 298
IPR002156 RNaseH_domain 30 145
PLAZA 3.0 Dicots AT3G45570