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  5. AT3G45580

AT3G45580


Description : RING/U-box protein with C6HC-type zinc finger


Gene families : OG_01_0000252 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G45580
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AT2G16520 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G21420 No alias IBR domain containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G22940 No alias BEST Arabidopsis thaliana protein match is: zinc finger... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G26135 No alias RING/U-box protein with C6HC-type zinc finger 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45540 No alias RING/U-box protein with C6HC-type zinc finger 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0004044 amidophosphoribosyltransferase activity IEP HCCA
BP GO:0006144 purine nucleobase metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009113 purine nucleobase biosynthetic process IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
InterPro domains Description Start Stop
IPR002867 IBR_dom 323 369
IPR002867 IBR_dom 247 308
IPR002156 RNaseH_domain 43 155
PLAZA 3.0 Dicots AT3G45580