AT3G46620

Description : zinc finger (C3HC4-type RING finger) family protein

Gene families : OG_01_0010100 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G46620
Cluster	HCCA: Cluster_253

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	None	Extended
BP	GO:0001101	response to acid chemical	None	Extended
BP	GO:0002252	immune effector process	None	Extended
BP	GO:0002376	immune system process	None	Extended
BP	GO:0002679	respiratory burst involved in defense response	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009414	response to water deprivation	IMP	Interproscan
BP	GO:0009415	response to water	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009611	response to wounding	RCA	Interproscan
BP	GO:0009612	response to mechanical stimulus	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009692	ethylene metabolic process	None	Extended
BP	GO:0009693	ethylene biosynthetic process	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IMP	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009873	ethylene-activated signaling pathway	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010200	response to chitin	IEP	Interproscan
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0016567	protein ubiquitination	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0035556	intracellular signal transduction	RCA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043449	cellular alkene metabolic process	None	Extended
BP	GO:0043450	alkene biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0045730	respiratory burst	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051865	protein autoubiquitination	IDA	Interproscan
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120251	hydrocarbon biosynthetic process	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended
BP	GO:0120254	olefinic compound metabolic process	None	Extended
BP	GO:0120255	olefinic compound biosynthetic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1900673	olefin metabolic process	None	Extended
BP	GO:1900674	olefin biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000103	sulfate assimilation	IEP	HCCA
BP	GO:0000165	MAPK cascade	IEP	HCCA
BP	GO:0000302	response to reactive oxygen species	IEP	HCCA
CC	GO:0000815	ESCRT III complex	IEP	HCCA
BP	GO:0001558	regulation of cell growth	IEP	HCCA
BP	GO:0002682	regulation of immune system process	IEP	HCCA
BP	GO:0002831	regulation of response to biotic stimulus	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003724	RNA helicase activity	IEP	HCCA
MF	GO:0004435	phosphatidylinositol phospholipase C activity	IEP	HCCA
MF	GO:0004620	phospholipase activity	IEP	HCCA
MF	GO:0004623	phospholipase A2 activity	IEP	HCCA
MF	GO:0004629	phospholipase C activity	IEP	HCCA
MF	GO:0004709	MAP kinase kinase kinase activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005615	extracellular space	IEP	HCCA
CC	GO:0005674	transcription factor TFIIF complex	IEP	HCCA
CC	GO:0005770	late endosome	IEP	HCCA
CC	GO:0005771	multivesicular body	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006352	DNA-templated transcription, initiation	IEP	HCCA
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006928	movement of cell or subcellular component	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
BP	GO:0007154	cell communication	IEP	HCCA
BP	GO:0007568	aging	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
MF	GO:0008083	growth factor activity	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009404	toxin metabolic process	IEP	HCCA
BP	GO:0009407	toxin catabolic process	IEP	HCCA
BP	GO:0009408	response to heat	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009617	response to bacterium	IEP	HCCA
BP	GO:0009620	response to fungus	IEP	HCCA
BP	GO:0009642	response to light intensity	IEP	HCCA
BP	GO:0009646	response to absence of light	IEP	HCCA
BP	GO:0009695	jasmonic acid biosynthetic process	IEP	HCCA
BP	GO:0009696	salicylic acid metabolic process	IEP	HCCA
BP	GO:0009697	salicylic acid biosynthetic process	IEP	HCCA
BP	GO:0009723	response to ethylene	IEP	HCCA
BP	GO:0009738	abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009751	response to salicylic acid	IEP	HCCA
BP	GO:0009753	response to jasmonic acid	IEP	HCCA
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009863	salicylic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009867	jasmonic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009961	response to 1-aminocyclopropane-1-carboxylic acid	IEP	HCCA
BP	GO:0009969	xyloglucan biosynthetic process	IEP	HCCA
MF	GO:0009973	adenylyl-sulfate reductase activity	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010286	heat acclimation	IEP	HCCA
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	HCCA
BP	GO:0010411	xyloglucan metabolic process	IEP	HCCA
BP	GO:0010449	root meristem growth	IEP	HCCA
BP	GO:0010583	response to cyclopentenone	IEP	HCCA
BP	GO:0010941	regulation of cell death	IEP	HCCA
BP	GO:0010942	positive regulation of cell death	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
CC	GO:0015629	actin cytoskeleton	IEP	HCCA
BP	GO:0016045	detection of bacterium	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
MF	GO:0016629	12-oxophytodienoate reductase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	HCCA
BP	GO:0018958	phenol-containing compound metabolic process	IEP	HCCA
BP	GO:0019321	pentose metabolic process	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0019900	kinase binding	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0022604	regulation of cell morphogenesis	IEP	HCCA
BP	GO:0022622	root system development	IEP	HCCA
BP	GO:0030029	actin filament-based process	IEP	HCCA
BP	GO:0030048	actin filament-based movement	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
MF	GO:0030545	signaling receptor regulator activity	IEP	HCCA
MF	GO:0030546	signaling receptor activator activity	IEP	HCCA
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	HCCA
CC	GO:0031306	intrinsic component of mitochondrial outer membrane	IEP	HCCA
CC	GO:0031307	integral component of mitochondrial outer membrane	IEP	HCCA
BP	GO:0031341	regulation of cell killing	IEP	HCCA
BP	GO:0031343	positive regulation of cell killing	IEP	HCCA
BP	GO:0031347	regulation of defense response	IEP	HCCA
BP	GO:0031348	negative regulation of defense response	IEP	HCCA
MF	GO:0031406	carboxylic acid binding	IEP	HCCA
BP	GO:0032101	regulation of response to external stimulus	IEP	HCCA
CC	GO:0032592	integral component of mitochondrial membrane	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033037	polysaccharide localization	IEP	HCCA
MF	GO:0033293	monocarboxylic acid binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0033843	xyloglucan 6-xylosyltransferase activity	IEP	HCCA
BP	GO:0034053	modulation by symbiont of host defense-related programmed cell death	IEP	HCCA
BP	GO:0034613	cellular protein localization	IEP	HCCA
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	HCCA
MF	GO:0035252	UDP-xylosyltransferase activity	IEP	HCCA
BP	GO:0035266	meristem growth	IEP	HCCA
BP	GO:0035821	modulation of process of other organism	IEP	HCCA
CC	GO:0036452	ESCRT complex	IEP	HCCA
MF	GO:0042171	lysophosphatidic acid acyltransferase activity	IEP	HCCA
MF	GO:0042285	xylosyltransferase activity	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0042537	benzene-containing compound metabolic process	IEP	HCCA
BP	GO:0042542	response to hydrogen peroxide	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0042732	D-xylose metabolic process	IEP	HCCA
BP	GO:0043067	regulation of programmed cell death	IEP	HCCA
BP	GO:0043068	positive regulation of programmed cell death	IEP	HCCA
BP	GO:0043069	negative regulation of programmed cell death	IEP	HCCA
BP	GO:0043200	response to amino acid	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0044003	modulation by symbiont of host process	IEP	HCCA
BP	GO:0044068	modulation by symbiont of host cellular process	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
BP	GO:0045088	regulation of innate immune response	IEP	HCCA
MF	GO:0045140	inositol phosphoceramide synthase activity	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046189	phenol-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046777	protein autophosphorylation	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0048018	receptor ligand activity	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0048571	long-day photoperiodism	IEP	HCCA
BP	GO:0048574	long-day photoperiodism, flowering	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0048585	negative regulation of response to stimulus	IEP	HCCA
BP	GO:0050688	regulation of defense response to virus	IEP	HCCA
BP	GO:0050691	regulation of defense response to virus by host	IEP	HCCA
BP	GO:0050776	regulation of immune response	IEP	HCCA
BP	GO:0050832	defense response to fungus	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
BP	GO:0051592	response to calcium ion	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051645	Golgi localization	IEP	HCCA
BP	GO:0051646	mitochondrion localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0051701	biological process involved in interaction with host	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0051709	regulation of killing of cells of other organism	IEP	HCCA
BP	GO:0051712	positive regulation of killing of cells of other organism	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0051817	modulation of process of other organism involved in symbiotic interaction	IEP	HCCA
BP	GO:0052031	modulation by symbiont of host defense response	IEP	HCCA
BP	GO:0052040	modulation by symbiont of host programmed cell death	IEP	HCCA
BP	GO:0052042	positive regulation by symbiont of host programmed cell death	IEP	HCCA
BP	GO:0052158	modulation by symbiont of host resistance gene-dependent defense response	IEP	HCCA
BP	GO:0052167	modulation by symbiont of host innate immune response	IEP	HCCA
BP	GO:0052173	response to defenses of other organism	IEP	HCCA
BP	GO:0052200	response to host defenses	IEP	HCCA
BP	GO:0052390	induction by symbiont of host innate immune response	IEP	HCCA
BP	GO:0052542	defense response by callose deposition	IEP	HCCA
BP	GO:0052545	callose localization	IEP	HCCA
BP	GO:0052553	modulation by symbiont of host immune response	IEP	HCCA
BP	GO:0052559	induction by symbiont of host immune response	IEP	HCCA
BP	GO:0052572	response to host immune response	IEP	HCCA
BP	GO:0055088	lipid homeostasis	IEP	HCCA
BP	GO:0055089	fatty acid homeostasis	IEP	HCCA
BP	GO:0055090	acylglycerol homeostasis	IEP	HCCA
BP	GO:0055091	phospholipid homeostasis	IEP	HCCA
BP	GO:0060151	peroxisome localization	IEP	HCCA
BP	GO:0060548	negative regulation of cell death	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070328	triglyceride homeostasis	IEP	HCCA
BP	GO:0070417	cellular response to cold	IEP	HCCA
BP	GO:0070542	response to fatty acid	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
MF	GO:0071617	lysophospholipid acyltransferase activity	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0075136	response to host	IEP	HCCA
BP	GO:0080050	regulation of seed development	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA
BP	GO:0080135	regulation of cellular response to stress	IEP	HCCA
BP	GO:0080164	regulation of nitric oxide metabolic process	IEP	HCCA
BP	GO:0080185	effector-mediated induction of plant hypersensitive response by symbiont	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
BP	GO:0098543	detection of other organism	IEP	HCCA
CC	GO:0098573	intrinsic component of mitochondrial membrane	IEP	HCCA
BP	GO:0098581	detection of external biotic stimulus	IEP	HCCA
BP	GO:0098754	detoxification	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:0140404	effector-mediated modulation of host innate immune response by symbiont	IEP	HCCA
BP	GO:0140415	effector-mediated modulation of host defenses by symbiont	IEP	HCCA
BP	GO:0140418	effector-mediated modulation of host process by symbiont	IEP	HCCA
MF	GO:1901149	salicylic acid binding	IEP	HCCA
BP	GO:1902065	response to L-glutamate	IEP	HCCA
BP	GO:2000034	regulation of seed maturation	IEP	HCCA
BP	GO:2000693	positive regulation of seed maturation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010543	DUF1117	274	393
IPR001841	Znf_RING	214	256
IPR039525	RNF126-like_zinc-ribbon	29	65

External Links

PLAZA 3.0 Dicots	AT3G46620

AT3G46620

Expression Profile

Co-expression Networks

Functional Annotation