AT3G48900

Description : single-stranded DNA endonuclease family protein

Gene families : OG_01_0005174 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005174_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G48900
Cluster	HCCA: Cluster_24

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	ISS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000002	mitochondrial genome maintenance	IEP	HCCA
BP	GO:0000018	regulation of DNA recombination	IEP	HCCA
BP	GO:0000723	telomere maintenance	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003909	DNA ligase activity	IEP	HCCA
MF	GO:0003910	DNA ligase (ATP) activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004592	pantoate-beta-alanine ligase activity	IEP	HCCA
MF	GO:0004640	phosphoribosylanthranilate isomerase activity	IEP	HCCA
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	HCCA
MF	GO:0004815	aspartate-tRNA ligase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005834	heterotrimeric G-protein complex	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006261	DNA-dependent DNA replication	IEP	HCCA
BP	GO:0006266	DNA ligation	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin assembly	IEP	HCCA
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	HCCA
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0009452	7-methylguanosine RNA capping	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0009875	pollen-pistil interaction	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010212	response to ionizing radiation	IEP	HCCA
BP	GO:0010332	response to gamma radiation	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0015939	pantothenate metabolic process	IEP	HCCA
BP	GO:0015940	pantothenate biosynthetic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016444	somatic cell DNA recombination	IEP	HCCA
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019478	D-amino acid catabolic process	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0031047	gene silencing by RNA	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031507	heterochromatin assembly	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0032204	regulation of telomere maintenance	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032877	positive regulation of DNA endoreduplication	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
MF	GO:0035197	siRNA binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0036260	RNA capping	IEP	HCCA
BP	GO:0040029	regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
MF	GO:0043138	3'-5' DNA helicase activity	IEP	HCCA
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
BP	GO:0045003	double-strand break repair via synthesis-dependent strand annealing	IEP	HCCA
BP	GO:0045596	negative regulation of cell differentiation	IEP	HCCA
BP	GO:0045740	positive regulation of DNA replication	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0045910	negative regulation of DNA recombination	IEP	HCCA
BP	GO:0046416	D-amino acid metabolic process	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048497	maintenance of floral organ identity	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
MF	GO:0061980	regulatory RNA binding	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0090068	positive regulation of cell cycle process	IEP	HCCA
BP	GO:0090700	maintenance of plant organ identity	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1905360	GTPase complex	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA
BP	GO:2000105	positive regulation of DNA-dependent DNA replication	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006086	XPG-I_dom	68	151

External Links

PLAZA 3.0 Dicots	AT3G48900

AT3G48900

Expression Profile

Co-expression Networks

Functional Annotation