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  5. AT3G49480

AT3G49480


Description : Protein with RNI-like/FBD-like domains


Gene families : OG_01_0000027 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G49480
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AT1G32375 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G50980 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G55030 No alias RNI-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G10750 No alias FBD domain family 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G12840 No alias unknown protein; Has 0 Blast hits to 0 proteins in 0... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G26930 No alias Protein with RNI-like/FBD-like domains 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G49020 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G49030 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G49040 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G49045 No alias No description available 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G52690 No alias RNI-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G55900 No alias F-box family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G00315 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G10410 No alias Leucine-rich repeat (LRR) family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G13965 No alias Protein with RNI-like/FBD-like domains 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G15075 No alias FBD-like domain family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G26350 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38570 No alias F-box/RNI-like superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38590 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G40750 No alias FBD / Leucine Rich Repeat domains containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44850 No alias Protein with RNI-like/FBD-like domains 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G52460 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56325 No alias FBD-like domain family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56370 No alias F-box/RNI-like/FBD-like domains-containing protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56390 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56400 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56430 No alias F-box/FBD-like domains containing protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56452 No alias FBD-like domain family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56560 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56570 No alias Leucine-rich repeat (LRR) family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56810 No alias F-box/RNI-like/FBD-like domains-containing protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56820 No alias F-box/RNI-like/FBD-like domains-containing protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G62970 No alias Protein with RNI-like/FBD-like domains 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006863 purine nucleobase transport RCA Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000374 Group III intron splicing IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0090351 seedling development IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR006566 FBD 226 270
IPR013101 Leu-rich_rpt_2 32 57
PLAZA 3.0 Dicots AT3G49480