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AT1G15340


Description : methyl-CPG-binding domain 10


Gene families : OG_01_0001265 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G15340
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Pp3c14_5500V3.1 No alias methyl-CPG-binding domain 10 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
MF GO:0008327 methyl-CpG binding ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0005652 nuclear lamina IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0006986 response to unfolded protein IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009886 post-embryonic animal morphogenesis IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009908 flower development IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010029 regulation of seed germination IEP HCCA
BP GO:0010051 xylem and phloem pattern formation IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0016246 RNA interference IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0021700 developmental maturation IEP HCCA
BP GO:0022610 biological adhesion IEP HCCA
BP GO:0023052 signaling IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0034399 nuclear periphery IEP HCCA
BP GO:0034605 cellular response to heat IEP HCCA
BP GO:0034620 cellular response to unfolded protein IEP HCCA
BP GO:0035194 post-transcriptional gene silencing by RNA IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
BP GO:0035967 cellular response to topologically incorrect protein IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0046685 response to arsenic-containing substance IEP HCCA
MF GO:0046982 protein heterodimerization activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048507 meristem development IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070417 cellular response to cold IEP HCCA
BP GO:0071310 cellular response to organic substance IEP HCCA
BP GO:0071695 anatomical structure maturation IEP HCCA
BP GO:0080001 mucilage extrusion from seed coat IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
BP GO:1900140 regulation of seedling development IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 9 74
PLAZA 3.0 Dicots AT1G15340