AT3G52450

Description : plant U-box 22

Gene families : OG_01_0000206 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000206_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G52450
Cluster	HCCA: Cluster_69

Target	Alias	Description	ECC score	Gene Family Method
AT3G02840	No alias	ARM repeat superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre03.g178550	No alias	Dynein assembly factor with WDR repeat domains 1...	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g22750.1	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g11020.1	No alias	E3 ubiquitin ligase (PUB)	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_6500V3.1	No alias	plant U-box 22	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
BP	GO:0002252	immune effector process	None	Extended
BP	GO:0002376	immune system process	None	Extended
BP	GO:0002679	respiratory burst involved in defense response	IGI	Interproscan
BP	GO:0002679	respiratory burst involved in defense response	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0004842	ubiquitin-protein transferase activity	IGI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0006865	amino acid transport	RCA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	IGI	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009414	response to water deprivation	IMP	Interproscan
BP	GO:0009415	response to water	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010200	response to chitin	IEP	Interproscan
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0015711	organic anion transport	None	Extended
BP	GO:0015804	neutral amino acid transport	None	Extended
BP	GO:0015824	proline transport	RCA	Interproscan
BP	GO:0015849	organic acid transport	None	Extended
BP	GO:0016567	protein ubiquitination	IDA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0045730	respiratory burst	None	Extended
BP	GO:0046942	carboxylic acid transport	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051865	protein autoubiquitination	IDA	Interproscan
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002682	regulation of immune system process	IEP	HCCA
BP	GO:0002831	regulation of response to biotic stimulus	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003867	4-aminobutyrate transaminase activity	IEP	HCCA
MF	GO:0004564	beta-fructofuranosidase activity	IEP	HCCA
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	HCCA
BP	GO:0005513	detection of calcium ion	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006020	inositol metabolic process	IEP	HCCA
BP	GO:0006105	succinate metabolic process	IEP	HCCA
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	HCCA
BP	GO:0006536	glutamate metabolic process	IEP	HCCA
BP	GO:0006538	glutamate catabolic process	IEP	HCCA
BP	GO:0006540	glutamate decarboxylation to succinate	IEP	HCCA
BP	GO:0006541	glutamine metabolic process	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006595	polyamine metabolic process	IEP	HCCA
BP	GO:0006598	polyamine catabolic process	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0008172	S-methyltransferase activity	IEP	HCCA
BP	GO:0008300	isoprenoid catabolic process	IEP	HCCA
MF	GO:0008506	sucrose:proton symporter activity	IEP	HCCA
MF	GO:0008898	S-adenosylmethionine-homocysteine S-methyltransferase activity	IEP	HCCA
MF	GO:0008970	phospholipase A1 activity	IEP	HCCA
BP	GO:0009065	glutamine family amino acid catabolic process	IEP	HCCA
BP	GO:0009404	toxin metabolic process	IEP	HCCA
BP	GO:0009407	toxin catabolic process	IEP	HCCA
BP	GO:0009448	gamma-aminobutyric acid metabolic process	IEP	HCCA
BP	GO:0009450	gamma-aminobutyric acid catabolic process	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
BP	GO:0009611	response to wounding	IEP	HCCA
BP	GO:0009620	response to fungus	IEP	HCCA
BP	GO:0009645	response to low light intensity stimulus	IEP	HCCA
MF	GO:0009669	sucrose:cation symporter activity	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	HCCA
BP	GO:0009738	abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009804	coumarin metabolic process	IEP	HCCA
BP	GO:0009805	coumarin biosynthetic process	IEP	HCCA
BP	GO:0009808	lignin metabolic process	IEP	HCCA
BP	GO:0009809	lignin biosynthetic process	IEP	HCCA
BP	GO:0009819	drought recovery	IEP	HCCA
BP	GO:0009865	pollen tube adhesion	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010036	response to boron-containing substance	IEP	HCCA
BP	GO:0010167	response to nitrate	IEP	HCCA
BP	GO:0010244	response to low fluence blue light stimulus by blue low-fluence system	IEP	HCCA
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	HCCA
BP	GO:0010422	regulation of brassinosteroid biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010583	response to cyclopentenone	IEP	HCCA
BP	GO:0010941	regulation of cell death	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
MF	GO:0015020	glucuronosyltransferase activity	IEP	HCCA
MF	GO:0015145	monosaccharide transmembrane transporter activity	IEP	HCCA
MF	GO:0015171	amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015174	basic amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015175	neutral amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015179	L-amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015193	L-proline transmembrane transporter activity	IEP	HCCA
CC	GO:0015630	microtubule cytoskeleton	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
BP	GO:0015706	nitrate transport	IEP	HCCA
BP	GO:0015766	disaccharide transport	IEP	HCCA
BP	GO:0015770	sucrose transport	IEP	HCCA
BP	GO:0015772	oligosaccharide transport	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
CC	GO:0016021	integral component of membrane	IEP	HCCA
BP	GO:0016103	diterpenoid catabolic process	IEP	HCCA
BP	GO:0016115	terpenoid catabolic process	IEP	HCCA
MF	GO:0016621	cinnamoyl-CoA reductase activity	IEP	HCCA
MF	GO:0016710	trans-cinnamate 4-monooxygenase activity	IEP	HCCA
MF	GO:0016841	ammonia-lyase activity	IEP	HCCA
BP	GO:0019218	regulation of steroid metabolic process	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019336	phenol-containing compound catabolic process	IEP	HCCA
BP	GO:0019482	beta-alanine metabolic process	IEP	HCCA
BP	GO:0019484	beta-alanine catabolic process	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032101	regulation of response to external stimulus	IEP	HCCA
BP	GO:0032350	regulation of hormone metabolic process	IEP	HCCA
MF	GO:0034387	4-aminobutyrate:pyruvate transaminase activity	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042754	negative regulation of circadian rhythm	IEP	HCCA
BP	GO:0043067	regulation of programmed cell death	IEP	HCCA
BP	GO:0043069	negative regulation of programmed cell death	IEP	HCCA
BP	GO:0043090	amino acid import	IEP	HCCA
BP	GO:0043649	dicarboxylic acid catabolic process	IEP	HCCA
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	HCCA
BP	GO:0045088	regulation of innate immune response	IEP	HCCA
BP	GO:0045176	apical protein localization	IEP	HCCA
BP	GO:0045487	gibberellin catabolic process	IEP	HCCA
MF	GO:0045543	gibberellin 2-beta-dioxygenase activity	IEP	HCCA
MF	GO:0045548	phenylalanine ammonia-lyase activity	IEP	HCCA
MF	GO:0045551	cinnamyl-alcohol dehydrogenase activity	IEP	HCCA
BP	GO:0045892	negative regulation of transcription, DNA-templated	IEP	HCCA
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046244	salicylic acid catabolic process	IEP	HCCA
BP	GO:0046271	phenylpropanoid catabolic process	IEP	HCCA
BP	GO:0046274	lignin catabolic process	IEP	HCCA
BP	GO:0046885	regulation of hormone biosynthetic process	IEP	HCCA
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	HCCA
MF	GO:0047714	galactolipase activity	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0050776	regulation of immune response	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0050810	regulation of steroid biosynthetic process	IEP	HCCA
BP	GO:0050832	defense response to fungus	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051592	response to calcium ion	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0051703	biological process involved in intraspecies interaction between organisms	IEP	HCCA
BP	GO:0052033	obsolete pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	IEP	HCCA
MF	GO:0052634	C-19 gibberellin 2-beta-dioxygenase activity	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0060548	negative regulation of cell death	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0080029	cellular response to boron-containing substance levels	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0080135	regulation of cellular response to stress	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
BP	GO:0080169	cellular response to boron-containing substance deprivation	IEP	HCCA
BP	GO:0090030	regulation of steroid hormone biosynthetic process	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:0098609	cell-cell adhesion	IEP	HCCA
BP	GO:0098754	detoxification	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	7	76

External Links

PLAZA 3.0 Dicots	AT3G52450

AT3G52450

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation