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AT3G54460


Description : SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein


Gene families : OG_01_0001954 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001954_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G54460
Cluster HCCA: Cluster_11


Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
MF GO:0005216 ion channel activity IEP HCCA
MF GO:0005217 intracellular ligand-gated ion channel activity IEP HCCA
MF GO:0005261 cation channel activity IEP HCCA
MF GO:0005262 calcium channel activity IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
CC GO:0005773 vacuole IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006760 folic acid-containing compound metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006816 calcium ion transport IEP HCCA
BP GO:0006874 cellular calcium ion homeostasis IEP HCCA
BP GO:0006875 cellular metal ion homeostasis IEP HCCA
MF GO:0008066 glutamate receptor activity IEP HCCA
BP GO:0008153 para-aminobenzoic acid biosynthetic process IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009396 folic acid-containing compound biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
MF GO:0015085 calcium ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated ion channel activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032386 regulation of intracellular transport IEP HCCA
BP GO:0032880 regulation of protein localization IEP HCCA
BP GO:0033157 regulation of intracellular protein transport IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
BP GO:0042306 regulation of protein import into nucleus IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0043200 response to amino acid IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0046417 chorismate metabolic process IEP HCCA
BP GO:0046482 para-aminobenzoic acid metabolic process IEP HCCA
BP GO:0046655 folic acid metabolic process IEP HCCA
BP GO:0046656 folic acid biosynthetic process IEP HCCA
MF GO:0046820 4-amino-4-deoxychorismate synthase activity IEP HCCA
BP GO:0046822 regulation of nucleocytoplasmic transport IEP HCCA
BP GO:0048316 seed development IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0051223 regulation of protein transport IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
BP GO:0055065 metal ion homeostasis IEP HCCA
BP GO:0055074 calcium ion homeostasis IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0070201 regulation of establishment of protein localization IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0071229 cellular response to acid chemical IEP HCCA
BP GO:0071230 cellular response to amino acid stimulus IEP HCCA
BP GO:0071310 cellular response to organic substance IEP HCCA
BP GO:0071417 cellular response to organonitrogen compound IEP HCCA
BP GO:0071495 cellular response to endogenous stimulus IEP HCCA
BP GO:0072503 cellular divalent inorganic cation homeostasis IEP HCCA
BP GO:0072507 divalent inorganic cation homeostasis IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098771 inorganic ion homeostasis IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1900180 regulation of protein localization to nucleus IEP HCCA
BP GO:1901699 cellular response to nitrogen compound IEP HCCA
BP GO:1901701 cellular response to oxygen-containing compound IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
BP GO:1904589 regulation of protein import IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 287 322
IPR011124 Znf_CW 577 619
IPR001650 Helicase_C 1194 1289
IPR000330 SNF2_N 333 969
PLAZA 3.0 Dicots AT3G54460