AT3G58210

Description : TRAF-like family protein

Gene families : OG_01_0000081 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000081_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G58210
Cluster	HCCA: Cluster_167

Target	Alias	Description	ECC score	Gene Family Method
AT1G31370	No alias	Ubiquitin-specific protease family C19-related protein	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G31380	No alias	TRAF-like family protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G31390	No alias	TRAF-like family protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G31400	No alias	TRAF-like family protein	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G01790	No alias	TRAF-like family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G05410	No alias	TRAF-like family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G05420	No alias	TRAF-like family protein	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G05430	No alias	Ubiquitin-specific protease family C19-related protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G42455	No alias	No description available	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G42460	No alias	TRAF-like family protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G42465	No alias	No description available	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G42470	No alias	TRAF-like family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G42475	No alias	No description available	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G42480	No alias	TRAF-like family protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G44805	No alias	TRAF-like superfamily protein	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58220	No alias	TRAF-like family protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58240	No alias	TRAF-like superfamily protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58260	No alias	TRAF-like family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58280	No alias	Arabidopsis phospholipase-like protein (PEARLI 4) with...	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58290	No alias	TRAF-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58330	No alias	Arabidopsis phospholipase-like protein (PEARLI 4) family	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58340	No alias	TRAF-like family protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58350	No alias	RESTRICTED TEV MOVEMENT 3	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58360	No alias	TRAF-like family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58370	No alias	TRAF-like family protein	0.11	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58440	No alias	TRAF-like superfamily protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	RCA	Interproscan
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0007129	homologous chromosome pairing at meiosis	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	RCA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002083	MATH/TRAF_dom	13	134

External Links

PLAZA 3.0 Dicots	AT3G58210

AT3G58210

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation