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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0015063 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT3G58590 | |
| Cluster | HCCA: Cluster_72 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | ND | Interproscan |
| CC | GO:0005739 | mitochondrion | ISM | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000075 | cell cycle checkpoint signaling | IEP | HCCA |
| BP | GO:0000076 | DNA replication checkpoint signaling | IEP | HCCA |
| BP | GO:0000226 | microtubule cytoskeleton organization | IEP | HCCA |
| BP | GO:0000959 | mitochondrial RNA metabolic process | IEP | HCCA |
| MF | GO:0003725 | double-stranded RNA binding | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006261 | DNA-dependent DNA replication | IEP | HCCA |
| BP | GO:0006304 | DNA modification | IEP | HCCA |
| BP | GO:0006305 | DNA alkylation | IEP | HCCA |
| BP | GO:0006306 | DNA methylation | IEP | HCCA |
| BP | GO:0006479 | protein methylation | IEP | HCCA |
| BP | GO:0007017 | microtubule-based process | IEP | HCCA |
| BP | GO:0007051 | spindle organization | IEP | HCCA |
| BP | GO:0008213 | protein alkylation | IEP | HCCA |
| BP | GO:0008283 | cell population proliferation | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0010948 | negative regulation of cell cycle process | IEP | HCCA |
| BP | GO:0016444 | somatic cell DNA recombination | IEP | HCCA |
| BP | GO:0016553 | base conversion or substitution editing | IEP | HCCA |
| BP | GO:0016554 | cytidine to uridine editing | IEP | HCCA |
| BP | GO:0016571 | histone methylation | IEP | HCCA |
| BP | GO:0018022 | peptidyl-lysine methylation | IEP | HCCA |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | HCCA |
| BP | GO:0031047 | gene silencing by RNA | IEP | HCCA |
| BP | GO:0031570 | DNA integrity checkpoint signaling | IEP | HCCA |
| BP | GO:0034968 | histone lysine methylation | IEP | HCCA |
| BP | GO:0044728 | DNA methylation or demethylation | IEP | HCCA |
| BP | GO:0045786 | negative regulation of cell cycle | IEP | HCCA |
| BP | GO:0051225 | spindle assembly | IEP | HCCA |
| BP | GO:0051567 | histone H3-K9 methylation | IEP | HCCA |
| BP | GO:0061647 | histone H3-K9 modification | IEP | HCCA |
| BP | GO:0080156 | mitochondrial mRNA modification | IEP | HCCA |
| BP | GO:0140694 | non-membrane-bounded organelle assembly | IEP | HCCA |
| BP | GO:1900864 | mitochondrial RNA modification | IEP | HCCA |
| BP | GO:1901988 | negative regulation of cell cycle phase transition | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 153 | 176 |
| IPR002885 | Pentatricopeptide_repeat | 613 | 643 |
| IPR002885 | Pentatricopeptide_repeat | 583 | 611 |
| IPR002885 | Pentatricopeptide_repeat | 685 | 708 |
| IPR002885 | Pentatricopeptide_repeat | 648 | 678 |
| IPR002885 | Pentatricopeptide_repeat | 253 | 275 |
| IPR002885 | Pentatricopeptide_repeat | 182 | 210 |
| IPR002885 | Pentatricopeptide_repeat | 508 | 555 |
| IPR002885 | Pentatricopeptide_repeat | 280 | 323 |
| IPR002885 | Pentatricopeptide_repeat | 79 | 123 |
| IPR002885 | Pentatricopeptide_repeat | 380 | 427 |
| PLAZA 3.0 Dicots | AT3G58590 |