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  5. AT3G58820

AT3G58820


Description : F-box/RNI-like superfamily protein


Gene families : OG_01_0000021 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G58820
Cluster HCCA: Cluster_240

Target Alias Description ECC score Gene Family Method Actions
AT2G42720 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G54160 No alias RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58860 No alias F-box/RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G13960 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38386 No alias F-box/RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38392 No alias No description available 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0000064 L-ornithine transmembrane transporter activity IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003941 L-serine ammonia-lyase activity IEP HCCA
MF GO:0004817 cysteine-tRNA ligase activity IEP HCCA
MF GO:0005200 structural constituent of cytoskeleton IEP HCCA
MF GO:0005253 anion channel activity IEP HCCA
MF GO:0005290 L-histidine transmembrane transporter activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005834 heterotrimeric G-protein complex IEP HCCA
BP GO:0006360 transcription by RNA polymerase I IEP HCCA
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP HCCA
BP GO:0006563 L-serine metabolic process IEP HCCA
MF GO:0008308 voltage-gated anion channel activity IEP HCCA
MF GO:0008509 anion transmembrane transporter activity IEP HCCA
MF GO:0008721 D-serine ammonia-lyase activity IEP HCCA
BP GO:0010219 regulation of vernalization response IEP HCCA
BP GO:0010221 negative regulation of vernalization response IEP HCCA
MF GO:0015173 aromatic amino acid transmembrane transporter activity IEP HCCA
MF GO:0015174 basic amino acid transmembrane transporter activity IEP HCCA
MF GO:0015179 L-amino acid transmembrane transporter activity IEP HCCA
MF GO:0015189 L-lysine transmembrane transporter activity IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016841 ammonia-lyase activity IEP HCCA
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP HCCA
MF GO:0030378 serine racemase activity IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0033597 mitotic checkpoint complex IEP HCCA
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP HCCA
BP GO:0046416 D-amino acid metabolic process IEP HCCA
MF GO:0047661 amino-acid racemase activity IEP HCCA
BP GO:0070178 D-serine metabolic process IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:1901474 azole transmembrane transporter activity IEP HCCA
CC GO:1905360 GTPase complex IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 5 39
PLAZA 3.0 Dicots AT3G58820