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  5. AT3G58930

AT3G58930


Description : F-box/RNI-like superfamily protein


Gene families : OG_01_0000021 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G58930
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AT2G29930 No alias F-box/RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58920 No alias F-box/RNI-like superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59000 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G35926 No alias Protein with RNI-like/FBD-like domains 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
CC GO:0000811 GINS complex IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0004396 hexokinase activity IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005093 Rab GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005337 nucleoside transmembrane transporter activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006808 regulation of nitrogen utilization IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007127 meiosis I IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0007140 male meiotic nuclear division IEP HCCA
BP GO:0007141 male meiosis I IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP HCCA
MF GO:0008901 ferredoxin hydrogenase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009432 SOS response IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009969 xyloglucan biosynthetic process IEP HCCA
BP GO:0010082 regulation of root meristem growth IEP HCCA
BP GO:0010100 negative regulation of photomorphogenesis IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010225 response to UV-C IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010411 xyloglucan metabolic process IEP HCCA
BP GO:0015858 nucleoside transport IEP HCCA
BP GO:0015864 pyrimidine nucleoside transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016695 oxidoreductase activity, acting on hydrogen as donor IEP HCCA
MF GO:0016699 oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor IEP HCCA
MF GO:0016819 hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0016925 protein sumoylation IEP HCCA
MF GO:0019789 SUMO transferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0031261 DNA replication preinitiation complex IEP HCCA
CC GO:0031300 intrinsic component of organelle membrane IEP HCCA
CC GO:0031301 integral component of organelle membrane IEP HCCA
CC GO:0031306 intrinsic component of mitochondrial outer membrane IEP HCCA
CC GO:0031307 integral component of mitochondrial outer membrane IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
BP GO:0031647 regulation of protein stability IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032592 integral component of mitochondrial membrane IEP HCCA
BP GO:0032876 negative regulation of DNA endoreduplication IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0033843 xyloglucan 6-xylosyltransferase activity IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035252 UDP-xylosyltransferase activity IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
MF GO:0042285 xylosyltransferase activity IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045489 pectin biosynthetic process IEP HCCA
BP GO:0045931 positive regulation of mitotic cell cycle IEP HCCA
MF GO:0047627 adenylylsulfatase activity IEP HCCA
BP GO:0048232 male gamete generation IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
MF GO:0050566 asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity IEP HCCA
BP GO:0050821 protein stabilization IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0051879 Hsp90 protein binding IEP HCCA
BP GO:0060249 anatomical structure homeostasis IEP HCCA
BP GO:0060250 germ-line stem-cell niche homeostasis IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0070919 production of siRNA involved in gene silencing by small RNA IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0080036 regulation of cytokinin-activated signaling pathway IEP HCCA
BP GO:0080038 positive regulation of cytokinin-activated signaling pathway IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
CC GO:0098573 intrinsic component of mitochondrial membrane IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
BP GO:0140013 meiotic nuclear division IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP HCCA
BP GO:2000539 regulation of protein geranylgeranylation IEP HCCA
BP GO:2000541 positive regulation of protein geranylgeranylation IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 4 41
IPR006566 FBD 401 433
PLAZA 3.0 Dicots AT3G58930