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  5. AT3G59170

AT3G59170


Description : F-box/RNI-like superfamily protein


Gene families : OG_01_0000021 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G59170
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
AT1G47920 No alias RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G48400 No alias F-box/RNI-like/FBD-like domains-containing protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G64540 No alias F-box/FBD-like domains containing protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G29930 No alias F-box/RNI-like superfamily protein 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G42720 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G44060 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G44080 No alias F-box family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G44090 No alias F-box family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G44180 No alias syntaxin-related family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59230 No alias RNI-like superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59240 No alias RNI-like superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G62440 No alias F-box/RNI-like superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G00320 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G13960 No alias F-box/RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G25860 No alias F-box/RNI-like superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38386 No alias F-box/RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38392 No alias No description available 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38396 No alias F-box/RNI-like superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G41630 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G41830 No alias RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0004396 hexokinase activity IEP HCCA
MF GO:0004448 isocitrate dehydrogenase activity IEP HCCA
MF GO:0004449 isocitrate dehydrogenase (NAD+) activity IEP HCCA
MF GO:0004565 beta-galactosidase activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
MF GO:0005337 nucleoside transmembrane transporter activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006102 isocitrate metabolic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
MF GO:0008883 glutamyl-tRNA reductase activity IEP HCCA
BP GO:0009555 pollen development IEP HCCA
MF GO:0009672 auxin:proton symporter activity IEP HCCA
BP GO:0009786 regulation of asymmetric cell division IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
BP GO:0010315 auxin efflux IEP HCCA
BP GO:0010928 regulation of auxin mediated signaling pathway IEP HCCA
MF GO:0015293 symporter activity IEP HCCA
MF GO:0015294 solute:cation symporter activity IEP HCCA
MF GO:0015295 solute:proton symporter activity IEP HCCA
MF GO:0015925 galactosidase activity IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0031329 regulation of cellular catabolic process IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening IEP HCCA
BP GO:0061013 regulation of mRNA catabolic process IEP HCCA
BP GO:0072350 tricarboxylic acid metabolic process IEP HCCA
MF GO:0080161 auxin transmembrane transporter activity IEP HCCA
BP GO:1902652 secondary alcohol metabolic process IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 12 43
IPR013101 Leu-rich_rpt_2 186 212
PLAZA 3.0 Dicots AT3G59170