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  5. AT1G16480

AT1G16480


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000019 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000019_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G16480
Cluster HCCA: Cluster_12


Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
BP GO:0000280 nuclear division IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
CC GO:0000811 GINS complex IEP HCCA
BP GO:0002832 negative regulation of response to biotic stimulus IEP HCCA
MF GO:0003688 DNA replication origin binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004607 phosphatidylcholine-sterol O-acyltransferase activity IEP HCCA
MF GO:0004725 protein tyrosine phosphatase activity IEP HCCA
MF GO:0004834 tryptophan synthase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
BP GO:0006089 lactate metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-dependent DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006706 steroid catabolic process IEP HCCA
BP GO:0006808 regulation of nitrogen utilization IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0009438 methylglyoxal metabolic process IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0010112 regulation of systemic acquired resistance IEP HCCA
BP GO:0010113 negative regulation of systemic acquired resistance IEP HCCA
BP GO:0010196 nonphotochemical quenching IEP HCCA
MF GO:0010385 double-stranded methylated DNA binding IEP HCCA
BP GO:0010500 transmitting tissue development IEP HCCA
BP GO:0015865 purine nucleotide transport IEP HCCA
BP GO:0015867 ATP transport IEP HCCA
BP GO:0015868 purine ribonucleotide transport IEP HCCA
BP GO:0016127 sterol catabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0018024 histone-lysine N-methyltransferase activity IEP HCCA
BP GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0030946 protein tyrosine phosphatase activity, metal-dependent IEP HCCA
CC GO:0031261 DNA replication preinitiation complex IEP HCCA
BP GO:0032102 negative regulation of response to external stimulus IEP HCCA
MF GO:0033984 indole-3-glycerol-phosphate lyase activity IEP HCCA
BP GO:0034433 steroid esterification IEP HCCA
BP GO:0034434 sterol esterification IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0042182 ketone catabolic process IEP HCCA
BP GO:0046185 aldehyde catabolic process IEP HCCA
MF GO:0046976 histone methyltransferase activity (H3-K27 specific) IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0048444 floral organ morphogenesis IEP HCCA
BP GO:0048446 petal morphogenesis IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048829 root cap development IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051503 adenine nucleotide transport IEP HCCA
BP GO:0051596 methylglyoxal catabolic process IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0055070 copper ion homeostasis IEP HCCA
BP GO:0061727 methylglyoxal catabolic process to lactate IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0070734 histone H3-K27 methylation IEP HCCA
MF GO:0080095 phosphatidylethanolamine-sterol O-acyltransferase activity IEP HCCA
MF GO:0080096 phosphatidate-sterol O-acyltransferase activity IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090697 post-embryonic plant organ morphogenesis IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
BP GO:1990066 energy quenching IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 199 224
IPR002885 Pentatricopeptide_repeat 24 54
IPR002885 Pentatricopeptide_repeat 126 156
IPR002885 Pentatricopeptide_repeat 531 561
IPR002885 Pentatricopeptide_repeat 227 254
IPR002885 Pentatricopeptide_repeat 298 325
IPR002885 Pentatricopeptide_repeat 328 357
IPR002885 Pentatricopeptide_repeat 503 527
IPR032867 DYW_dom 804 927
IPR002885 Pentatricopeptide_repeat 427 473
IPR002885 Pentatricopeptide_repeat 633 677
PLAZA 3.0 Dicots AT1G16480