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  5. AT3G62850

AT3G62850


Description : zinc finger protein-related


Gene families : OG_01_0001492 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001492_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G62850
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT1G06810 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G13280 No alias Putative endonuclease or glycosyl hydrolase 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G35640 No alias Putative endonuclease or glycosyl hydrolase 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0003886 DNA (cytosine-5-)-methyltransferase activity IEP HCCA
CC GO:0005815 microtubule organizing center IEP HCCA
CC GO:0005819 spindle IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0005881 cytoplasmic microtubule IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0009008 DNA-methyltransferase activity IEP HCCA
BP GO:0009292 genetic transfer IEP HCCA
BP GO:0009294 DNA mediated transformation IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
BP GO:0009652 thigmotropism IEP HCCA
BP GO:0009958 positive gravitropism IEP HCCA
CC GO:0010005 cortical microtubule, transverse to long axis IEP HCCA
BP GO:0010154 fruit development IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0044764 multi-organism cellular process IEP HCCA
BP GO:0051704 multi-organism process IEP HCCA
CC GO:0055028 cortical microtubule IEP HCCA
BP GO:0060688 regulation of morphogenesis of a branching structure IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1905428 regulation of plant organ formation IEP HCCA
BP GO:2000032 regulation of secondary shoot formation IEP HCCA
InterPro domains Description Start Stop
IPR021139 NYN_limkain-b1 15 148
IPR021139 NYN_limkain-b1 240 366
PLAZA 3.0 Dicots AT3G62850