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AT4G00380


Description : XH/XS domain-containing protein


Gene families : OG_01_0001264 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G00380
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AT1G15910 No alias XH/XS domain-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0080188 gene silencing by RNA-directed DNA methylation IGI Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000217 DNA secondary structure binding IEP HCCA
CC GO:0000228 nuclear chromosome IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0000404 heteroduplex DNA loop binding IEP HCCA
BP GO:0000710 meiotic mismatch repair IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0002376 immune system process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004407 histone deacetylase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006379 mRNA cleavage IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP HCCA
BP GO:0009954 proximal/distal pattern formation IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010051 xylem and phloem pattern formation IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
BP GO:0010528 regulation of transposition IEP HCCA
BP GO:0010529 negative regulation of transposition IEP HCCA
BP GO:0010589 leaf proximal/distal pattern formation IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016458 obsolete gene silencing IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0019213 deacetylase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031048 heterochromatin assembly by small RNA IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
MF GO:0032135 DNA insertion or deletion binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032300 mismatch repair complex IEP HCCA
MF GO:0033558 protein deacetylase activity IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
MF GO:0035197 siRNA binding IEP HCCA
BP GO:0035279 mRNA cleavage involved in gene silencing by miRNA IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043570 maintenance of DNA repeat elements IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045596 negative regulation of cell differentiation IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0048497 maintenance of floral organ identity IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
MF GO:0061980 regulatory RNA binding IEP HCCA
BP GO:0065001 specification of axis polarity IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0080154 regulation of fertilization IEP HCCA
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090700 maintenance of plant organ identity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
CC GO:1990391 DNA repair complex IEP HCCA
BP GO:2000008 regulation of protein localization to cell surface IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR005380 XS_domain 118 224
IPR005381 Znf-XS_domain 42 84
IPR005379 Uncharacterised_XH 503 633
PLAZA 3.0 Dicots AT4G00380