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  5. AT4G01890

AT4G01890


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0001990 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001990_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G01890
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AT1G02460 No alias Pectin lyase-like superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G26610 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g21140.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0004033 aldo-keto reductase (NADP) activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004737 pyruvate decarboxylase activity IEP HCCA
MF GO:0005385 zinc ion transmembrane transporter activity IEP HCCA
MF GO:0005496 steroid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 ion transport IEP HCCA
BP GO:0006812 cation transport IEP HCCA
BP GO:0006820 anion transport IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0006829 zinc ion transport IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008142 oxysterol binding IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009267 cellular response to starvation IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009736 cytokinin-activated signaling pathway IEP HCCA
BP GO:0009741 response to brassinosteroid IEP HCCA
BP GO:0009825 multidimensional cell growth IEP HCCA
BP GO:0009826 unidimensional cell growth IEP HCCA
BP GO:0009828 plant-type cell wall loosening IEP HCCA
CC GO:0009986 cell surface IEP HCCA
BP GO:0009991 response to extracellular stimulus IEP HCCA
BP GO:0010106 cellular response to iron ion starvation IEP HCCA
BP GO:0010167 response to nitrate IEP HCCA
MF GO:0010294 abscisic acid glucosyltransferase activity IEP HCCA
BP GO:0010306 rhamnogalacturonan II biosynthetic process IEP HCCA
BP GO:0010359 regulation of anion channel activity IEP HCCA
BP GO:0010396 rhamnogalacturonan II metabolic process IEP HCCA
BP GO:0010541 acropetal auxin transport IEP HCCA
BP GO:0014070 response to organic cyclic compound IEP HCCA
MF GO:0015105 arsenite transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0015700 arsenite transport IEP HCCA
BP GO:0015706 nitrate transport IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP HCCA
BP GO:0019852 L-ascorbic acid metabolic process IEP HCCA
BP GO:0019853 L-ascorbic acid biosynthetic process IEP HCCA
BP GO:0022898 regulation of transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0031667 response to nutrient levels IEP HCCA
BP GO:0031668 cellular response to extracellular stimulus IEP HCCA
BP GO:0031669 cellular response to nutrient levels IEP HCCA
BP GO:0032409 regulation of transporter activity IEP HCCA
BP GO:0032412 regulation of ion transmembrane transporter activity IEP HCCA
BP GO:0032879 regulation of localization IEP HCCA
MF GO:0032934 sterol binding IEP HCCA
BP GO:0034762 regulation of transmembrane transport IEP HCCA
BP GO:0034765 regulation of ion transmembrane transport IEP HCCA
MF GO:0035252 UDP-xylosyltransferase activity IEP HCCA
BP GO:0040007 growth IEP HCCA
MF GO:0042285 xylosyltransferase activity IEP HCCA
BP GO:0042594 response to starvation IEP HCCA
BP GO:0043090 amino acid import IEP HCCA
BP GO:0043269 regulation of ion transport IEP HCCA
BP GO:0044070 regulation of anion transport IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0048527 lateral root development IEP HCCA
BP GO:0048528 post-embryonic root development IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
BP GO:0048767 root hair elongation IEP HCCA
MF GO:0050105 L-gulonolactone oxidase activity IEP HCCA
BP GO:0051049 regulation of transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0052325 cell wall pectin biosynthetic process IEP HCCA
BP GO:0060560 developmental growth involved in morphogenesis IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071496 cellular response to external stimulus IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0090696 post-embryonic plant organ development IEP HCCA
BP GO:1901334 lactone metabolic process IEP HCCA
BP GO:1901336 lactone biosynthetic process IEP HCCA
BP GO:1901698 response to nitrogen compound IEP HCCA
BP GO:1903959 regulation of anion transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 98 421
PLAZA 3.0 Dicots AT4G01890