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  5. AT4G02000

AT4G02000


Description : unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G13450.1); Has 165 Blast hits to 161 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG_01_0000208 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000208_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G02000
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AT2G16676 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G31590 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G31430 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G42140 No alias zinc ion binding;nucleic acid binding 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G04730 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G51195 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000374 Group III intron splicing IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0010018 far-red light signaling pathway IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0042753 positive regulation of circadian rhythm IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0071490 cellular response to far red light IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0090351 seedling development IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR025836 Zn_knuckle_CX2CX4HX4C 93 140
IPR025558 DUF4283 6 90
PLAZA 3.0 Dicots AT4G02000