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  5. AT4G05000

AT4G05000


Description : Vacuolar protein sorting-associated protein VPS28 family protein


Gene families : OG_01_0003475 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003475_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G05000
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
Cre16.g678100 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g04540.1 No alias component VPS28 of ESCRT-I complex 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_20060V3.1 No alias Vacuolar protein sorting-associated protein VPS28 family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex ISS Interproscan
MF GO:0005215 transporter activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006810 transport ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000303 response to superoxide IEP HCCA
BP GO:0000305 response to oxygen radical IEP HCCA
BP GO:0000578 embryonic axis specification IEP HCCA
MF GO:0004656 procollagen-proline 4-dioxygenase activity IEP HCCA
MF GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
CC GO:0005778 peroxisomal membrane IEP HCCA
CC GO:0005779 integral component of peroxisomal membrane IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006623 protein targeting to vacuole IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0008540 proteasome regulatory particle, base subcomplex IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0009062 fatty acid catabolic process IEP HCCA
BP GO:0009798 axis specification IEP HCCA
BP GO:0009942 longitudinal axis specification IEP HCCA
BP GO:0009945 radial axis specification IEP HCCA
BP GO:0009988 cell-cell recognition IEP HCCA
BP GO:0015031 protein transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0016021 integral component of membrane IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016559 peroxisome fission IEP HCCA
BP GO:0016578 histone deubiquitination IEP HCCA
BP GO:0018126 protein hydroxylation IEP HCCA
BP GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
BP GO:0019511 peptidyl-proline hydroxylation IEP HCCA
MF GO:0019798 procollagen-proline dioxygenase activity IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
CC GO:0031201 SNARE complex IEP HCCA
CC GO:0031231 intrinsic component of peroxisomal membrane IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
MF GO:0031543 peptidyl-proline dioxygenase activity IEP HCCA
MF GO:0031545 peptidyl-proline 4-dioxygenase activity IEP HCCA
CC GO:0031903 microbody membrane IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
BP GO:0034613 cellular protein localization IEP HCCA
MF GO:0035064 methylated histone binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0044242 cellular lipid catabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0046519 sphingoid metabolic process IEP HCCA
BP GO:0046520 sphingoid biosynthetic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048508 embryonic meristem development IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071470 cellular response to osmotic stress IEP HCCA
BP GO:0071472 cellular response to salt stress IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072329 monocarboxylic acid catabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072665 protein localization to vacuole IEP HCCA
BP GO:0072666 establishment of protein localization to vacuole IEP HCCA
BP GO:0080173 male-female gamete recognition during double fertilization forming a zygote and endosperm IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
MF GO:0140030 modification-dependent protein binding IEP HCCA
MF GO:0140034 methylation-dependent protein binding IEP HCCA
InterPro domains Description Start Stop
IPR007143 Vps28 19 205
PLAZA 3.0 Dicots AT4G05000