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  5. AT4G05230

AT4G05230


Description : Ubiquitin-like superfamily protein


Gene families : OG_01_0001041 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001041_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G05230
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT4G02950 No alias Ubiquitin family protein 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G03350 No alias ubiquitin family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G03370 No alias Ubiquitin family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G05240 No alias Ubiquitin-like superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G05250 No alias Ubiquitin-like superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G05260 No alias Ubiquitin-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G05270 No alias Ubiquitin-like superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G05310 No alias Ubiquitin-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005337 nucleoside transmembrane transporter activity IEP HCCA
MF GO:0005375 copper ion transmembrane transporter activity IEP HCCA
CC GO:0005887 integral component of plasma membrane IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010584 pollen exine formation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
MF GO:0015089 high-affinity copper ion transmembrane transporter activity IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
MF GO:0015145 monosaccharide transmembrane transporter activity IEP HCCA
MF GO:0015398 high-affinity secondary active ammonium transmembrane transporter activity IEP HCCA
BP GO:0015695 organic cation transport IEP HCCA
BP GO:0015749 monosaccharide transmembrane transport IEP HCCA
BP GO:0015858 nucleoside transport IEP HCCA
BP GO:0018126 protein hydroxylation IEP HCCA
BP GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEP HCCA
BP GO:0019511 peptidyl-proline hydroxylation IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0034219 carbohydrate transmembrane transport IEP HCCA
MF GO:0051119 sugar transmembrane transporter activity IEP HCCA
BP GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IEP HCCA
BP GO:0072488 ammonium transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 3 72
PLAZA 3.0 Dicots AT4G05230