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  5. AT4G05250

AT4G05250


Description : Ubiquitin-like superfamily protein


Gene families : OG_01_0001041 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001041_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G05250
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AT4G02950 No alias Ubiquitin family protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G03350 No alias ubiquitin family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G03370 No alias Ubiquitin family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G05230 No alias Ubiquitin-like superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G05240 No alias Ubiquitin-like superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G05260 No alias Ubiquitin-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G05270 No alias Ubiquitin-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G05310 No alias Ubiquitin-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004693 cyclin-dependent protein serine/threonine kinase activity IEP HCCA
MF GO:0008327 methyl-CpG binding IEP HCCA
MF GO:0015386 potassium:proton antiporter activity IEP HCCA
MF GO:0022821 potassium ion antiporter activity IEP HCCA
MF GO:0033612 receptor serine/threonine kinase binding IEP HCCA
BP GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
MF GO:0097472 cyclin-dependent protein kinase activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP HCCA
BP GO:1904030 negative regulation of cyclin-dependent protein kinase activity IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 3 72
PLAZA 3.0 Dicots AT4G05250