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AT4G09560


Description : Protease-associated (PA) RING/U-box zinc finger family protein


Gene families : OG_01_0000711 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000711_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G09560
Cluster HCCA: Cluster_40


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
MF GO:0008233 peptidase activity ISS Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
CC GO:0000418 RNA polymerase IV complex IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003720 telomerase activity IEP HCCA
MF GO:0003721 telomerase RNA reverse transcriptase activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0004536 deoxyribonuclease activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005673 transcription factor TFIIE complex IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007004 telomere maintenance via telomerase IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0009662 etioplast organization IEP HCCA
BP GO:0010018 far-red light signaling pathway IEP HCCA
BP GO:0010495 long-distance posttranscriptional gene silencing IEP HCCA
BP GO:0010833 telomere maintenance via telomere lengthening IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0031048 heterochromatin assembly by small RNA IEP HCCA
BP GO:0031221 arabinan metabolic process IEP HCCA
CC GO:0031350 intrinsic component of plastid membrane IEP HCCA
CC GO:0031351 integral component of plastid membrane IEP HCCA
CC GO:0031354 intrinsic component of plastid outer membrane IEP HCCA
CC GO:0031355 integral component of plastid outer membrane IEP HCCA
CC GO:0031358 intrinsic component of chloroplast outer membrane IEP HCCA
CC GO:0031359 integral component of chloroplast outer membrane IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032386 regulation of intracellular transport IEP HCCA
BP GO:0032388 positive regulation of intracellular transport IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033157 regulation of intracellular protein transport IEP HCCA
BP GO:0034250 positive regulation of cellular amide metabolic process IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0035884 arabinan biosynthetic process IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044088 regulation of vacuole organization IEP HCCA
BP GO:0044090 positive regulation of vacuole organization IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0050000 chromosome localization IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0051050 positive regulation of transport IEP HCCA
BP GO:0051222 positive regulation of protein transport IEP HCCA
BP GO:0051223 regulation of protein transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0070201 regulation of establishment of protein localization IEP HCCA
BP GO:0070536 protein K63-linked deubiquitination IEP HCCA
BP GO:0071108 protein K48-linked deubiquitination IEP HCCA
BP GO:0071490 cellular response to far red light IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090316 positive regulation of intracellular protein transport IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1903829 positive regulation of protein localization IEP HCCA
BP GO:1904951 positive regulation of establishment of protein localization IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 234 276
IPR003137 PA_domain 74 142
PLAZA 3.0 Dicots AT4G09560