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AT4G11690


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0000212 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G11690
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AT1G02060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G07740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G53330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G74580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G09060 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G46100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G64320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-dependent DNA replication IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
BP GO:0009292 genetic transfer IEP HCCA
BP GO:0009294 DNA mediated transformation IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
BP GO:0044764 multi-organism cellular process IEP HCCA
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0051704 multi-organism process IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 371 420
IPR002885 Pentatricopeptide_repeat 196 245
IPR002885 Pentatricopeptide_repeat 302 349
IPR002885 Pentatricopeptide_repeat 476 525
IPR002885 Pentatricopeptide_repeat 262 295
IPR002885 Pentatricopeptide_repeat 438 470
IPR002885 Pentatricopeptide_repeat 97 125
IPR002885 Pentatricopeptide_repeat 165 194
PLAZA 3.0 Dicots AT4G11690