AT4G11960

Description : PGR5-like B

Gene families : OG_01_0004100 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004100_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G11960
Cluster	HCCA: Cluster_141

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006778	porphyrin-containing compound metabolic process	None	Extended
BP	GO:0006787	porphyrin-containing compound catabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009767	photosynthetic electron transport chain	None	Extended
BP	GO:0009773	photosynthetic electron transport in photosystem I	IGI	Interproscan
BP	GO:0009773	photosynthetic electron transport in photosystem I	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	IGI	Interproscan
BP	GO:0015994	chlorophyll metabolic process	None	Extended
BP	GO:0015996	chlorophyll catabolic process	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0022900	electron transport chain	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
BP	GO:0033015	tetrapyrrole catabolic process	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046149	pigment catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
MF	GO:0000175	3'-5'-exoribonuclease activity	IEP	HCCA
MF	GO:0003713	transcription coactivator activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003978	UDP-glucose 4-epimerase activity	IEP	HCCA
MF	GO:0004108	citrate (Si)-synthase activity	IEP	HCCA
MF	GO:0004532	exoribonuclease activity	IEP	HCCA
MF	GO:0004559	alpha-mannosidase activity	IEP	HCCA
MF	GO:0004805	trehalose-phosphatase activity	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
BP	GO:0006007	glucose catabolic process	IEP	HCCA
BP	GO:0006099	tricarboxylic acid cycle	IEP	HCCA
BP	GO:0006152	purine nucleoside catabolic process	IEP	HCCA
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	HCCA
BP	GO:0006218	uridine catabolic process	IEP	HCCA
BP	GO:0006855	xenobiotic transmembrane transport	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0006995	cellular response to nitrogen starvation	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
MF	GO:0008477	purine nucleosidase activity	IEP	HCCA
BP	GO:0009116	nucleoside metabolic process	IEP	HCCA
BP	GO:0009119	ribonucleoside metabolic process	IEP	HCCA
BP	GO:0009164	nucleoside catabolic process	IEP	HCCA
BP	GO:0009561	megagametogenesis	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009627	systemic acquired resistance	IEP	HCCA
BP	GO:0009657	plastid organization	IEP	HCCA
BP	GO:0009658	chloroplast organization	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0009737	response to abscisic acid	IEP	HCCA
BP	GO:0009863	salicylic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009873	ethylene-activated signaling pathway	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0010190	cytochrome b6f complex assembly	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
MF	GO:0015086	cadmium ion transmembrane transporter activity	IEP	HCCA
BP	GO:0015691	cadmium ion transport	IEP	HCCA
MF	GO:0015923	mannosidase activity	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016145	S-glycoside catabolic process	IEP	HCCA
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
BP	GO:0017004	cytochrome complex assembly	IEP	HCCA
MF	GO:0019172	glyoxalase III activity	IEP	HCCA
BP	GO:0019320	hexose catabolic process	IEP	HCCA
BP	GO:0019759	glycosinolate catabolic process	IEP	HCCA
BP	GO:0019762	glucosinolate catabolic process	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	HCCA
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	HCCA
MF	GO:0036440	citrate synthase activity	IEP	HCCA
BP	GO:0042278	purine nucleoside metabolic process	IEP	HCCA
BP	GO:0042343	indole glucosinolate metabolic process	IEP	HCCA
BP	GO:0042344	indole glucosinolate catabolic process	IEP	HCCA
BP	GO:0042454	ribonucleoside catabolic process	IEP	HCCA
BP	GO:0042908	xenobiotic transport	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0044273	sulfur compound catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
MF	GO:0045437	uridine nucleosidase activity	IEP	HCCA
BP	GO:0045454	cell redox homeostasis	IEP	HCCA
MF	GO:0045551	cinnamyl-alcohol dehydrogenase activity	IEP	HCCA
BP	GO:0046108	uridine metabolic process	IEP	HCCA
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	HCCA
BP	GO:0046133	pyrimidine ribonucleoside catabolic process	IEP	HCCA
BP	GO:0046135	pyrimidine nucleoside catabolic process	IEP	HCCA
BP	GO:0046365	monosaccharide catabolic process	IEP	HCCA
BP	GO:0046777	protein autophosphorylation	IEP	HCCA
MF	GO:0046912	acyltransferase, acyl groups converted into alkyl on transfer	IEP	HCCA
MF	GO:0047622	adenosine nucleosidase activity	IEP	HCCA
MF	GO:0047681	aryl-alcohol dehydrogenase (NADP+) activity	IEP	HCCA
MF	GO:0047724	inosine nucleosidase activity	IEP	HCCA
MF	GO:0050263	ribosylpyrimidine nucleosidase activity	IEP	HCCA
MF	GO:0050373	UDP-arabinose 4-epimerase activity	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0052482	defense response by cell wall thickening	IEP	HCCA
BP	GO:0052544	defense response by callose deposition in cell wall	IEP	HCCA
MF	GO:0070063	RNA polymerase binding	IEP	HCCA
BP	GO:0071365	cellular response to auxin stimulus	IEP	HCCA
BP	GO:0071366	cellular response to indolebutyric acid stimulus	IEP	HCCA
BP	GO:0071407	cellular response to organic cyclic compound	IEP	HCCA
BP	GO:0071417	cellular response to organonitrogen compound	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072523	purine-containing compound catabolic process	IEP	HCCA
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	HCCA
MF	GO:0072585	xanthosine nucleotidase activity	IEP	HCCA
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	HCCA
BP	GO:0080026	response to indolebutyric acid	IEP	HCCA
BP	GO:0097305	response to alcohol	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA
BP	GO:1901658	glycosyl compound catabolic process	IEP	HCCA

No InterPro domains available for this sequence

External Links

PLAZA 3.0 Dicots	AT4G11960

AT4G11960

Expression Profile

Co-expression Networks

Functional Annotation