AT4G12860


Description : EF hand calcium-binding protein family


Gene families : OG_01_0000095 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000095_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G12860
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT1G73630 No alias EF hand calcium-binding protein family 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_10220V3.1 No alias EF hand calcium-binding protein family 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_25180V3.1 No alias EF hand calcium-binding protein family 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISS Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
BP GO:0009567 double fertilization forming a zygote and endosperm IMP Interproscan
BP GO:0009827 plant-type cell wall modification RCA Interproscan
BP GO:0009860 pollen tube growth RCA Interproscan
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001558 regulation of cell growth IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004022 alcohol dehydrogenase (NAD+) activity IEP HCCA
MF GO:0004470 malic enzyme activity IEP HCCA
MF GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 ion channel activity IEP HCCA
MF GO:0005388 P-type calcium transporter activity IEP HCCA
MF GO:0005451 monovalent cation:proton antiporter activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005884 actin filament IEP HCCA
CC GO:0005938 cell cortex IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006108 malate metabolic process IEP HCCA
BP GO:0006814 sodium ion transport IEP HCCA
BP GO:0006875 cellular metal ion homeostasis IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007204 positive regulation of cytosolic calcium ion concentration IEP HCCA
BP GO:0008064 regulation of actin polymerization or depolymerization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0009865 pollen tube adhesion IEP HCCA
BP GO:0009957 epidermal cell fate specification IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010584 pollen exine formation IEP HCCA
BP GO:0010769 regulation of cell morphogenesis involved in differentiation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
MF GO:0015075 ion transmembrane transporter activity IEP HCCA
MF GO:0015081 sodium ion transmembrane transporter activity IEP HCCA
MF GO:0015204 urea transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015298 solute:cation antiporter activity IEP HCCA
MF GO:0015299 solute:proton antiporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015385 sodium:proton antiporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015491 cation:cation antiporter activity IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
BP GO:0015840 urea transport IEP HCCA
MF GO:0016004 phospholipase activator activity IEP HCCA
MF GO:0016175 superoxide-generating NAD(P)H oxidase activity IEP HCCA
CC GO:0016324 apical plasma membrane IEP HCCA
MF GO:0016615 malate dehydrogenase activity IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016652 oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0017157 regulation of exocytosis IEP HCCA
MF GO:0018455 alcohol dehydrogenase [NAD(P)+] activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019755 one-carbon compound transport IEP HCCA
BP GO:0022604 regulation of cell morphogenesis IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
CC GO:0030133 transport vesicle IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0030427 site of polarized growth IEP HCCA
MF GO:0030551 cyclic nucleotide binding IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0030832 regulation of actin filament length IEP HCCA
BP GO:0030834 regulation of actin filament depolymerization IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032956 regulation of actin cytoskeleton organization IEP HCCA
BP GO:0032970 regulation of actin filament-based process IEP HCCA
BP GO:0034220 ion transmembrane transport IEP HCCA
BP GO:0035023 regulation of Rho protein signal transduction IEP HCCA
BP GO:0035024 negative regulation of Rho protein signal transduction IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0035725 sodium ion transmembrane transport IEP HCCA
CC GO:0035838 growing cell tip IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
CC GO:0042995 cell projection IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
CC GO:0045177 apical part of cell IEP HCCA
MF GO:0045309 protein phosphorylated amino acid binding IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046580 negative regulation of Ras protein signal transduction IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0048868 pollen tube development IEP HCCA
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP HCCA
BP GO:0050829 defense response to Gram-negative bacterium IEP HCCA
BP GO:0050848 regulation of calcium-mediated signaling IEP HCCA
BP GO:0050850 positive regulation of calcium-mediated signaling IEP HCCA
BP GO:0051046 regulation of secretion IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051058 negative regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
MF GO:0051139 metal ion:proton antiporter activity IEP HCCA
MF GO:0051219 phosphoprotein binding IEP HCCA
BP GO:0051260 protein homooligomerization IEP HCCA
CC GO:0051286 cell tip IEP HCCA
BP GO:0051480 regulation of cytosolic calcium ion concentration IEP HCCA
BP GO:0051510 regulation of unidimensional cell growth IEP HCCA
BP GO:0051648 vesicle localization IEP HCCA
BP GO:0051650 establishment of vesicle localization IEP HCCA
BP GO:0051703 biological process involved in intraspecies interaction between organisms IEP HCCA
BP GO:0055065 metal ion homeostasis IEP HCCA
CC GO:0060187 cell pole IEP HCCA
MF GO:0060229 lipase activator activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0060627 regulation of vesicle-mediated transport IEP HCCA
CC GO:0070382 exocytic vesicle IEP HCCA
BP GO:0072503 cellular divalent inorganic cation homeostasis IEP HCCA
BP GO:0072507 divalent inorganic cation homeostasis IEP HCCA
BP GO:0080092 regulation of pollen tube growth IEP HCCA
CC GO:0090404 pollen tube tip IEP HCCA
CC GO:0090406 pollen tube IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
BP GO:0098609 cell-cell adhesion IEP HCCA
BP GO:0098655 cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0098772 molecular function regulator IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099503 secretory vesicle IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
BP GO:0110053 regulation of actin filament organization IEP HCCA
CC GO:0120025 plasma membrane bounded cell projection IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901879 regulation of protein depolymerization IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
BP GO:1902533 positive regulation of intracellular signal transduction IEP HCCA
BP GO:1903530 regulation of secretion by cell IEP HCCA
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 6 66
IPR002048 EF_hand_dom 76 142
PLAZA 3.0 Dicots AT4G12860