AT4G13820

Description : Leucine-rich repeat (LRR) family protein

Gene families : OG_01_0000107 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G13820
Cluster	HCCA: Cluster_169

Target	Alias	Description	ECC score	Gene Family Method
AT1G45616	No alias	receptor like protein 6	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G15042	No alias	Leucine-rich repeat (LRR) family protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G15080	No alias	receptor like protein 19	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G05660	No alias	receptor like protein 33	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G27060	No alias	receptor like protein 53	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	None	Extended
BP	GO:0000302	response to reactive oxygen species	None	Extended
BP	GO:0000303	response to superoxide	RCA	Interproscan
BP	GO:0000305	response to oxygen radical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
BP	GO:0007165	signal transduction	IC	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008219	cell death	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009863	salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009873	ethylene-activated signaling pathway	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0016301	kinase activity	ISS	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	HCCA
BP	GO:0000304	response to singlet oxygen	IEP	HCCA
BP	GO:0001666	response to hypoxia	IEP	HCCA
BP	GO:0002239	response to oomycetes	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
MF	GO:0004022	alcohol dehydrogenase (NAD+) activity	IEP	HCCA
MF	GO:0004806	triglyceride lipase activity	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006814	sodium ion transport	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0006995	cellular response to nitrogen starvation	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009626	plant-type hypersensitive response	IEP	HCCA
BP	GO:0009627	systemic acquired resistance	IEP	HCCA
BP	GO:0009696	salicylic acid metabolic process	IEP	HCCA
BP	GO:0009697	salicylic acid biosynthetic process	IEP	HCCA
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0009808	lignin metabolic process	IEP	HCCA
BP	GO:0009809	lignin biosynthetic process	IEP	HCCA
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	HCCA
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0010618	aerenchyma formation	IEP	HCCA
BP	GO:0010942	positive regulation of cell death	IEP	HCCA
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015204	urea transmembrane transporter activity	IEP	HCCA
MF	GO:0015370	solute:sodium symporter activity	IEP	HCCA
CC	GO:0016602	CCAAT-binding factor complex	IEP	HCCA
MF	GO:0018455	alcohol dehydrogenase [NAD(P)+] activity	IEP	HCCA
BP	GO:0018958	phenol-containing compound metabolic process	IEP	HCCA
MF	GO:0019904	protein domain specific binding	IEP	HCCA
MF	GO:0030275	LRR domain binding	IEP	HCCA
BP	GO:0034050	programmed cell death induced by symbiont	IEP	HCCA
BP	GO:0035725	sodium ion transmembrane transport	IEP	HCCA
BP	GO:0036293	response to decreased oxygen levels	IEP	HCCA
BP	GO:0042537	benzene-containing compound metabolic process	IEP	HCCA
BP	GO:0042742	defense response to bacterium	IEP	HCCA
MF	GO:0042887	amide transmembrane transporter activity	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0043562	cellular response to nitrogen levels	IEP	HCCA
BP	GO:0044403	biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
MF	GO:0045551	cinnamyl-alcohol dehydrogenase activity	IEP	HCCA
BP	GO:0046189	phenol-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	HCCA
BP	GO:0051702	biological process involved in interaction with symbiont	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0070482	response to oxygen levels	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013210	LRR_N_plant-typ	31	78
IPR001611	Leu-rich_rpt	494	515
IPR001611	Leu-rich_rpt	134	155
IPR001611	Leu-rich_rpt	541	563

External Links

PLAZA 3.0 Dicots	AT4G13820

AT4G13820

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation