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AT1G17970


Description : RING/U-box superfamily protein


Gene families : OG_01_0003311 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003311_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G17970
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
AT4G00070 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000578 embryonic axis specification IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004520 endodeoxyribonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004536 deoxyribonuclease activity IEP HCCA
MF GO:0004563 beta-N-acetylhexosaminidase activity IEP HCCA
MF GO:0005372 water transmembrane transporter activity IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006308 DNA catabolic process IEP HCCA
BP GO:0006665 sphingolipid metabolic process IEP HCCA
BP GO:0007602 phototransduction IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0008361 regulation of cell size IEP HCCA
BP GO:0009269 response to desiccation IEP HCCA
CC GO:0009505 plant-type cell wall IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009585 red, far-red light phototransduction IEP HCCA
BP GO:0009638 phototropism IEP HCCA
MF GO:0009672 auxin:proton symporter activity IEP HCCA
BP GO:0009798 axis specification IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009942 longitudinal axis specification IEP HCCA
BP GO:0009958 positive gravitropism IEP HCCA
BP GO:0010017 red or far-red light signaling pathway IEP HCCA
BP GO:0010044 response to aluminum ion IEP HCCA
MF GO:0010329 auxin efflux transmembrane transporter activity IEP HCCA
BP GO:0010411 xyloglucan metabolic process IEP HCCA
MF GO:0015250 water channel activity IEP HCCA
MF GO:0015929 hexosaminidase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016615 malate dehydrogenase activity IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
BP GO:0030148 sphingolipid biosynthetic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0035252 UDP-xylosyltransferase activity IEP HCCA
BP GO:0040007 growth IEP HCCA
MF GO:0042285 xylosyltransferase activity IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0047560 3-dehydrosphinganine reductase activity IEP HCCA
BP GO:0048588 developmental cell growth IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
BP GO:0048767 root hair elongation IEP HCCA
BP GO:0060560 developmental growth involved in morphogenesis IEP HCCA
BP GO:0071489 cellular response to red or far red light IEP HCCA
MF GO:0080161 auxin transmembrane transporter activity IEP HCCA
BP GO:0080170 hydrogen peroxide transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 319 361
PLAZA 3.0 Dicots AT1G17970