AT4G15475

Description : F-box/RNI-like superfamily protein

Gene families : OG_01_0000213 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000213_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G15475
Cluster	HCCA: Cluster_91

Target	Alias	Description	ECC score	Gene Family Method	Actions
Pp3c6_5570V3.1	No alias	F-box/RNI-like superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006486	protein glycosylation	RCA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043413	macromolecule glycosylation	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0070085	glycosylation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000045	autophagosome assembly	IEP	HCCA
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0000309	nicotinamide-nucleotide adenylyltransferase activity	IEP	HCCA
CC	GO:0000407	phagophore assembly site	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003747	translation release factor activity	IEP	HCCA
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	HCCA
MF	GO:0004515	nicotinate-nucleotide adenylyltransferase activity	IEP	HCCA
BP	GO:0006301	postreplication repair	IEP	HCCA
BP	GO:0006415	translational termination	IEP	HCCA
BP	GO:0006783	heme biosynthetic process	IEP	HCCA
BP	GO:0007033	vacuole organization	IEP	HCCA
MF	GO:0008079	translation termination factor activity	IEP	HCCA
MF	GO:0008327	methyl-CpG binding	IEP	HCCA
BP	GO:0009435	NAD biosynthetic process	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
MF	GO:0010428	methyl-CpNpG binding	IEP	HCCA
MF	GO:0010429	methyl-CpNpN binding	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016578	histone deubiquitination	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
BP	GO:0019359	nicotinamide nucleotide biosynthetic process	IEP	HCCA
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	HCCA
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0022411	cellular component disassembly	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
MF	GO:0031491	nucleosome binding	IEP	HCCA
BP	GO:0032984	protein-containing complex disassembly	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042168	heme metabolic process	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0043624	cellular protein complex disassembly	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	HCCA
MF	GO:0070566	adenylyltransferase activity	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	HCCA
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	HCCA
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1905037	autophagosome organization	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001611	Leu-rich_rpt	190	212
IPR001611	Leu-rich_rpt	475	497
IPR001611	Leu-rich_rpt	423	445
IPR001611	Leu-rich_rpt	448	471
IPR001611	Leu-rich_rpt	164	185
IPR001611	Leu-rich_rpt	526	546

External Links

PLAZA 3.0 Dicots	AT4G15475

AT4G15475

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation