AT4G18180

Description : Pectin lyase-like superfamily protein

Gene families : OG_01_0000396 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000396_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G18180
Cluster	HCCA: Cluster_167

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT2G15470	No alias	Pectin lyase-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G33160	No alias	glycoside hydrolase family 28 protein /...	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004565	beta-galactosidase activity	IEP	HCCA
MF	GO:0004708	MAP kinase kinase activity	IEP	HCCA
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	HCCA
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006071	glycerol metabolic process	IEP	HCCA
MF	GO:0008889	glycerophosphodiester phosphodiesterase activity	IEP	HCCA
BP	GO:0009786	regulation of asymmetric cell division	IEP	HCCA
BP	GO:0015858	nucleoside transport	IEP	HCCA
MF	GO:0015925	galactosidase activity	IEP	HCCA
BP	GO:0019400	alditol metabolic process	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	66	377

External Links

PLAZA 3.0 Dicots	AT4G18180