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  5. AT4G18520

AT4G18520


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000019 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000019_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G18520
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G30700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G16860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000162 tryptophan biosynthetic process IEP HCCA
MF GO:0004592 pantoate-beta-alanine ligase activity IEP HCCA
MF GO:0004640 phosphoribosylanthranilate isomerase activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0005249 voltage-gated potassium channel activity IEP HCCA
MF GO:0005267 potassium channel activity IEP HCCA
BP GO:0006261 DNA-dependent DNA replication IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
CC GO:0008076 voltage-gated potassium channel complex IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0015939 pantothenate metabolic process IEP HCCA
BP GO:0015940 pantothenate biosynthetic process IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0022843 voltage-gated cation channel activity IEP HCCA
BP GO:0032504 multicellular organism reproduction IEP HCCA
CC GO:0034702 ion channel complex IEP HCCA
CC GO:0034703 cation channel complex IEP HCCA
CC GO:0034705 potassium channel complex IEP HCCA
MF GO:0035197 siRNA binding IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0046219 indolalkylamine biosynthetic process IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
MF GO:0061980 regulatory RNA binding IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:0080154 regulation of fertilization IEP HCCA
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:2000008 regulation of protein localization to cell surface IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 553 583
IPR002885 Pentatricopeptide_repeat 525 551
IPR002885 Pentatricopeptide_repeat 323 348
IPR002885 Pentatricopeptide_repeat 250 277
IPR002885 Pentatricopeptide_repeat 121 147
IPR002885 Pentatricopeptide_repeat 149 179
IPR002885 Pentatricopeptide_repeat 223 248
IPR002885 Pentatricopeptide_repeat 450 498
IPR002885 Pentatricopeptide_repeat 349 395
PLAZA 3.0 Dicots AT4G18520