AT4G18930

Description : RNA ligase/cyclic nucleotide phosphodiesterase family protein

Gene families : OG_01_0001845 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001845_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G18930
Cluster	HCCA: Cluster_123

Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004112	cyclic-nucleotide phosphodiesterase activity	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	TAS	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
MF	GO:0008081	phosphoric diester hydrolase activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0042578	phosphoric ester hydrolase activity	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	IEP	HCCA
CC	GO:0000220	vacuolar proton-transporting V-type ATPase, V0 domain	IEP	HCCA
CC	GO:0000785	chromatin	IEP	HCCA
BP	GO:0002682	regulation of immune system process	IEP	HCCA
BP	GO:0002831	regulation of response to biotic stimulus	IEP	HCCA
MF	GO:0003840	obsolete gamma-glutamyltransferase activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006749	glutathione metabolic process	IEP	HCCA
BP	GO:0006751	glutathione catabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006805	xenobiotic metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006811	ion transport	IEP	HCCA
BP	GO:0006825	copper ion transport	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0006972	hyperosmotic response	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
MF	GO:0008752	FMN reductase activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009595	detection of biotic stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009627	systemic acquired resistance	IEP	HCCA
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	HCCA
BP	GO:0009696	salicylic acid metabolic process	IEP	HCCA
BP	GO:0009697	salicylic acid biosynthetic process	IEP	HCCA
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009863	salicylic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009867	jasmonic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009894	regulation of catabolic process	IEP	HCCA
BP	GO:0009895	negative regulation of catabolic process	IEP	HCCA
CC	GO:0010168	ER body	IEP	HCCA
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	HCCA
BP	GO:0010506	regulation of autophagy	IEP	HCCA
BP	GO:0010507	negative regulation of autophagy	IEP	HCCA
BP	GO:0010941	regulation of cell death	IEP	HCCA
BP	GO:0016045	detection of bacterium	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016075	rRNA catabolic process	IEP	HCCA
MF	GO:0016530	metallochaperone activity	IEP	HCCA
MF	GO:0016531	copper chaperone activity	IEP	HCCA
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	HCCA
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016755	aminoacyltransferase activity	IEP	HCCA
MF	GO:0016756	glutathione gamma-glutamylcysteinyltransferase activity	IEP	HCCA
BP	GO:0018958	phenol-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
MF	GO:0019829	ATPase-coupled cation transmembrane transporter activity	IEP	HCCA
BP	GO:0031329	regulation of cellular catabolic process	IEP	HCCA
BP	GO:0031330	negative regulation of cellular catabolic process	IEP	HCCA
BP	GO:0031347	regulation of defense response	IEP	HCCA
BP	GO:0031348	negative regulation of defense response	IEP	HCCA
BP	GO:0032101	regulation of response to external stimulus	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
CC	GO:0033179	proton-transporting V-type ATPase, V0 domain	IEP	HCCA
BP	GO:0034613	cellular protein localization	IEP	HCCA
BP	GO:0034661	ncRNA catabolic process	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	HCCA
BP	GO:0042537	benzene-containing compound metabolic process	IEP	HCCA
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	HCCA
BP	GO:0042742	defense response to bacterium	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
BP	GO:0043067	regulation of programmed cell death	IEP	HCCA
BP	GO:0043171	peptide catabolic process	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0043900	obsolete regulation of multi-organism process	IEP	HCCA
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0044273	sulfur compound catabolic process	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	HCCA
BP	GO:0045088	regulation of innate immune response	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046189	phenol-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	HCCA
MF	GO:0046982	protein heterodimerization activity	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0048585	negative regulation of response to stimulus	IEP	HCCA
BP	GO:0050776	regulation of immune response	IEP	HCCA
BP	GO:0050832	defense response to fungus	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051606	detection of stimulus	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
MF	GO:0080030	methyl indole-3-acetate esterase activity	IEP	HCCA
MF	GO:0080031	methyl salicylate esterase activity	IEP	HCCA
MF	GO:0080032	methyl jasmonate esterase activity	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA
BP	GO:0080135	regulation of cellular response to stress	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
BP	GO:0098543	detection of other organism	IEP	HCCA
BP	GO:0098581	detection of external biotic stimulus	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012386	Cyclic-nucl_3Pdiesterase	10	162

External Links

PLAZA 3.0 Dicots	AT4G18930

AT4G18930

Expression Profile

Co-expression Networks

Functional Annotation